RNA–Protein interactions for RNA: ENST00000399903.6

PTPRA-205, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5 BASIC

Gene PTPRA, Length 3,337 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-205ENST00000399903 QKIQ96PU8 341 aaKnown RBP eCLIP17.14■□□□□ 0.337e-12■■■■■ 74.3
PTPRA-205ENST00000399903 PRDM12Q9H4Q4 367 aa17.14■□□□□ 0.33
PTPRA-205ENST00000399903 LTB4R2Q9NPC1 389 aa17.14■□□□□ 0.33
PTPRA-205ENST00000399903 LAMA2P24043 3122 aaKnown RBP17.13■□□□□ 0.33
PTPRA-205ENST00000399903 MGAMO43451 1857 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 SEPHS1P49903 392 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 C1QTNF8P60827 252 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 SLC13A2Q13183 592 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 LAMC2Q13753 1193 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 LRP8Q14114 963 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 RFTN1Q14699 578 aaPredicted RBP17.13■□□□□ 0.33
PTPRA-205ENST00000399903 RPS6KA2Q15349 733 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 INAQ16352 499 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 ZNF792Q3KQV3 632 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 IQSEC1Q6DN90 963 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 GPR142Q7Z601 462 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 ZNF354CQ86Y25 554 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 CLEC4FQ8N1N0 589 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 KDM1BQ8NB78 822 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 PTPN18Q99952 460 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 TBC1D13Q9NVG8 400 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 SMPD3Q9NY59 655 aaPredicted RBP17.13■□□□□ 0.33
PTPRA-205ENST00000399903 HESX1Q9UBX0 185 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 PTBP2Q9UKA9 531 aaKnown RBP17.13■□□□□ 0.33
PTPRA-205ENST00000399903 ZNF701M0R085 212 aaPredicted RBP17.13■□□□□ 0.33
PTPRA-205ENST00000399903 CSHL1Q14406 222 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 HERC3Q15034 1050 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 MAPRE2Q15555 327 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 SLC36A3Q495N2 470 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 HABP4Q5JVS0 413 aaKnown RBP17.13■□□□□ 0.33
PTPRA-205ENST00000399903 LDLRAD1Q5T700 205 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 ZNF567Q8N184 647 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 ZFP90Q8TF47 636 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 MS4A4AQ96JQ5 239 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 ZNF670Q9BS34 389 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 EXD2Q9NVH0 621 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 PRMT7Q9NVM4 692 aaPredicted RBP17.13■□□□□ 0.33
PTPRA-205ENST00000399903 TCAF1Q9Y4C2 921 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 DYTNA2CJ06 578 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 B4GALT4O60513 344 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 CABYRO75952 493 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 CAPGP40121 348 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 RPS9P46781 194 aaKnown RBP17.13■□□□□ 0.33
PTPRA-205ENST00000399903 BEX3Q00994 111 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 PPP1R8Q12972 351 aaKnown RBP17.13■□□□□ 0.33
PTPRA-205ENST00000399903 GRM1Q13255 1194 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 TMEM132DQ14C87 1099 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 SPANXN3Q5MJ09 141 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 SIX5Q8N196 739 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 CSF3RQ99062 836 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 GOLGA2P5Q9HBQ8 144 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 HMG20AQ9NP66 347 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 VTA1Q9NP79 307 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 ABCB10Q9NRK6 738 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 UTP6Q9NYH9 597 aaKnown RBP17.13■□□□□ 0.33
PTPRA-205ENST00000399903 ACOT9Q9Y305 439 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 TRAF6Q9Y4K3 522 aa17.13■□□□□ 0.33
PTPRA-205ENST00000399903 MAGED1Q9Y5V3 778 aaPredicted RBP17.13■□□□□ 0.33
PTPRA-205ENST00000399903 LAMA3Q16787 3333 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 TRIM24O15164 1050 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 TIMM44O43615 452 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 H2AFYO75367 372 aaKnown RBP17.12■□□□□ 0.33
PTPRA-205ENST00000399903 BMP2P12643 396 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 SLC12A2P55011 1212 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 YBX1P67809 324 aaKnown RBP17.12■□□□□ 0.33
PTPRA-205ENST00000399903 NSUN2Q08J23 767 aaKnown RBP eCLIP17.12■□□□□ 0.33
PTPRA-205ENST00000399903 NCBP2-AS2Q69YL0 99 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 SLC22A16Q86VW1 577 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 DENND6AQ8IWF6 608 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 PSD4Q8NDX1 1056 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 PSMA8Q8TAA3 256 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 USP33Q8TEY7 942 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 GLMNQ92990 594 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 IL12RB2Q99665 862 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 DSEQ9UL01 958 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 SLCO1B7G3V0H7 640 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 AGRPO00253 132 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 TSPAN1O60635 241 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 IL18RAPO95256 599 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 HSPA1AP0DMV8 641 aaKnown RBP17.12■□□□□ 0.33
PTPRA-205ENST00000399903 HSPA1BP0DMV9 641 aaKnown RBP17.12■□□□□ 0.33
PTPRA-205ENST00000399903 NMBRP28336 390 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 SERPINB1P30740 379 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 HOXD11P31277 338 aaPredicted RBP17.12■□□□□ 0.33
PTPRA-205ENST00000399903 GJA9P57773 515 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 MPP1Q00013 466 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 PLIN5Q00G26 463 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 ZNF846Q147U1 533 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 MAPRE1Q15691 268 aaKnown RBP17.12■□□□□ 0.33
PTPRA-205ENST00000399903 FAM83EQ2M2I3 478 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 MARCH8Q5T0T0 291 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 TERB1Q8NA31 727 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 SH3YL1Q96HL8 342 aaPredicted RBP17.12■□□□□ 0.33
PTPRA-205ENST00000399903 ELMO2Q96JJ3 720 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 RNF145Q96MT1 663 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 NAT9Q9BTE0 207 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 SPC25Q9HBM1 224 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 TNFRSF12AQ9NP84 129 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 ITM2CQ9NQX7 267 aa17.12■□□□□ 0.33
PTPRA-205ENST00000399903 M0R3G1 203 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms