RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 MAGEB5Q9BZ81 275 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 DNAJC5Q9H3Z4 198 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 OXSMQ9NWU1 459 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 UCKL1Q9NWZ5 548 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 PCDHGA10Q9Y5H3 936 aa9.34□□□□□ -0.91
COL28A1-201ENST00000399429 BAZ2AQ9UIF9 1905 aaKnown RBP9.34□□□□□ -0.91
COL28A1-201ENST00000399429 MAGEB16A2A368 324 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 FAM172BPA6NC97 362 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 H3BMM5 538 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 I3L521 148 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 LRIG2O94898 1065 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 SNHG28P0DPA3 235 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 YWHAQP27348 245 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 TNFSF9P41273 254 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 HARS2P49590 506 aaKnown RBP9.34□□□□□ -0.92
COL28A1-201ENST00000399429 POU4F1Q01851 419 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 IL18R1Q13478 541 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 QPRTQ15274 297 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 NR6A1Q15406 480 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 SNAP47Q5SQN1 464 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 FAM183BPQ6ZVS7 135 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 RPS27LQ71UM5 84 aaKnown RBP9.34□□□□□ -0.92
COL28A1-201ENST00000399429 LYSMD3Q7Z3D4 306 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 TRPV3Q8NET8 790 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 OR7G1Q8NGA0 311 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 SIPA1Q96FS4 1042 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 P2RY11Q96G91 374 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 ACAT2Q9BWD1 397 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 DCSTAMPQ9H295 470 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 KAT8Q9H7Z6 458 aaKnown RBP9.34□□□□□ -0.92
COL28A1-201ENST00000399429 AMBNQ9NP70 447 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 MFHAS1Q9Y4C4 1052 aa9.34□□□□□ -0.92
COL28A1-201ENST00000399429 BCKDKO14874 412 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 RGS10O43665 173 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 BCAS1O75363 584 aaPredicted RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 SLC9A3P48764 834 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 HLCSP50747 726 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 NDST1P52848 882 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 DPY19L2P1Q6NXN4 242 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 LINC00523Q86TU6 105 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 RDH11Q8TC12 318 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 MRPL57Q9BQC6 102 aaKnown RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 ZSCAN5AQ9BUG6 496 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 FICDQ9BVA6 458 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 ZNF556Q9HAH1 456 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 ANKMY1Q9P2S6 941 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 CNOT11Q9UKZ1 510 aaKnown RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 RNF112Q9ULX5 631 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 CORINQ9Y5Q5 1042 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 TUBGCP6Q96RT7 1819 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 SPDYE2BA6NHP3 402 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 AQP12BA6NM10 295 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 C12orf71A8MTZ7 269 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 CENPBD1B2RD01 187 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 ZNF701M0R085 212 aaPredicted RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 ARPC2O15144 300 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 NBNO60934 754 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 PDE9AO76083 593 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 SPDYE6P0CI01 402 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 ZNF26P17031 533 aaPredicted RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 TPSB2P20231 275 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 ENDOUP21128 410 aaKnown RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 ALDH3B2P48448 385 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 SKIV2LQ15477 1246 aaKnown RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 TPSAB1Q15661 275 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 KLHL12Q53G59 568 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 ZNF57Q68EA5 555 aaPredicted RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 PSTKQ8IV42 348 aaKnown RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 AQP12AQ8IXF9 295 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 SNX19Q92543 992 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 ZNF516Q92618 1163 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 TFAP2CQ92754 450 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 RPL10LQ96L21 214 aaKnown RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 SIGLEC10Q96LC7 697 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 ALPK1Q96QP1 1244 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 CGREF1Q99674 301 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 ARPC5LQ9BPX5 153 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 KCNS3Q9BQ31 491 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 COPS4Q9BT78 406 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 C8orf4Q9NR00 106 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 CRYL1Q9Y2S2 319 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 MYO5AQ9Y4I1 1855 aaKnown RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 PRSS51A0A1B0GVH4 220 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 TYW5A2RUC4 315 aaKnown RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 XPNPEP2O43895 674 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 C4BPAP04003 597 aaKnown RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 CXCL8P10145 99 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 MBL2P11226 248 aaPredicted RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 MATN1P21941 496 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 AKT1P31749 480 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 HNRNPFP52597 415 aaKnown RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 TUBA3CQ13748 450 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 ZC3H12BQ5HYM0 836 aaKnown RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 ATF7IP2Q5U623 682 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 PLET1Q6UQ28 207 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 FAM196AQ6ZSG2 479 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 VASH1Q7L8A9 365 aaPredicted RBP9.33□□□□□ -0.92
COL28A1-201ENST00000399429 MILR1Q7Z6M3 343 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 TRIM48Q8IWZ4 208 aa9.33□□□□□ -0.92
COL28A1-201ENST00000399429 TAGAPQ8N103 731 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms