RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 OR2AP1Q8NGE2 309 aa10.43□□□□□ -0.74
NEDD8-202ENST00000396828 EXD1Q8NHP7 514 aa10.43□□□□□ -0.74
NEDD8-202ENST00000396828 MAPK15Q8TD08 544 aa10.43□□□□□ -0.74
NEDD8-202ENST00000396828 TEKT4Q8WW24 435 aa10.43□□□□□ -0.74
NEDD8-202ENST00000396828 HSPH1Q92598 858 aa10.43□□□□□ -0.74
NEDD8-202ENST00000396828 ALG3Q92685 438 aa10.43□□□□□ -0.74
NEDD8-202ENST00000396828 FUBP1Q96AE4 644 aaKnown RBP10.43□□□□□ -0.74
NEDD8-202ENST00000396828 ATXN7L3BQ96GX2 97 aa10.43□□□□□ -0.74
NEDD8-202ENST00000396828 PRR11Q96HE9 360 aaPredicted RBP10.43□□□□□ -0.74
NEDD8-202ENST00000396828 CAPZA3Q96KX2 299 aa10.43□□□□□ -0.74
NEDD8-202ENST00000396828 DEPDC7Q96QD5 511 aa10.43□□□□□ -0.74
NEDD8-202ENST00000396828 NAP1L3Q99457 506 aaPredicted RBP10.43□□□□□ -0.74
NEDD8-202ENST00000396828 WRAP53Q9BUR4 548 aaKnown RBP10.43□□□□□ -0.74
NEDD8-202ENST00000396828 IPO11Q9UI26 975 aaKnown RBP10.43□□□□□ -0.74
NEDD8-202ENST00000396828 SATB2Q9UPW6 733 aa10.43□□□□□ -0.74
NEDD8-202ENST00000396828 MRFAP1Q9Y605 127 aa10.43□□□□□ -0.74
NEDD8-202ENST00000396828 LRRD1A4D1F6 860 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 NEMP1O14524 444 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 MUSKO15146 869 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 ZNF185O15231 689 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 TSPAN6O43657 245 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 RAMP2O60895 175 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 TMCC1O94876 653 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 GSRP00390 522 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 RARAP10276 462 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 PYGMP11217 842 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 TCF4P15884 667 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 TIMP2P16035 220 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 LSSP48449 732 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 MAPKAPK2P49137 400 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 PDX1P52945 283 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 KRT81Q14533 505 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 POLD3Q15054 466 aaPredicted RBP10.42□□□□□ -0.74
NEDD8-202ENST00000396828 PDK2Q15119 407 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 SMTNL2Q2TAL5 461 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 PRRT3Q5FWE3 981 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 C3orf38Q5JPI3 329 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 EFHC2Q5JST6 749 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 ZCCHC8Q6NZY4 707 aaKnown RBP10.42□□□□□ -0.74
NEDD8-202ENST00000396828 GDPD4Q6W3E5 623 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 GPR155Q7Z3F1 870 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 TTC7BQ86TV6 843 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 SLC35F3Q8IY50 421 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 ZNF843Q8N446 348 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 CEP112Q8N8E3 955 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 TP53I13Q8NBR0 393 aaPredicted RBP10.42□□□□□ -0.74
NEDD8-202ENST00000396828 ZNF248Q8NDW4 579 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 MNS1Q8NEH6 495 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 FAM174AQ8TBP5 190 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 ACTRT1Q8TDG2 376 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 COG1Q8WTW3 980 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 TBC1D31Q96DN5 1066 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 EXOC2Q96KP1 924 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 LGMNQ99538 433 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 LRRC61Q9BV99 259 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 DUSP23Q9BVJ7 150 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 BOCQ9BWV1 1114 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 ABCG4Q9H172 646 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 MAGEH1Q9H213 219 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 POLR1BQ9H9Y6 1135 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.42□□□□□ -0.74
NEDD8-202ENST00000396828 COQ6Q9Y2Z9 468 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 ENTPD2Q9Y5L3 495 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 CSNK1G3Q9Y6M4 447 aa10.42□□□□□ -0.74
NEDD8-202ENST00000396828 EME2A4GXA9 379 aaPredicted RBP10.41□□□□□ -0.74
NEDD8-202ENST00000396828 PGRMC1O00264 195 aaKnown RBP10.41□□□□□ -0.74
NEDD8-202ENST00000396828 YY2O15391 372 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 DXOO77932 396 aaKnown RBP10.41□□□□□ -0.74
NEDD8-202ENST00000396828 PIGNO95427 931 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 POP4O95707 220 aaKnown RBP10.41□□□□□ -0.74
NEDD8-202ENST00000396828 KRT10P13645 584 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 TSHRP16473 764 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 IL1R2P27930 398 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 PCBP4P57723 403 aaKnown RBP10.41□□□□□ -0.74
NEDD8-202ENST00000396828 SNRPD1P62314 119 aaKnown RBP10.41□□□□□ -0.74
NEDD8-202ENST00000396828 C19orf57Q0VDD7 668 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 CYTH1Q15438 398 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 LONRF2Q1L5Z9 754 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 ATP13A4Q4VNC1 1196 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 ARHGAP40Q5TG30 622 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 ZSWIM9Q86XI8 627 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 CREG2Q8IUH2 290 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 PHACTR4Q8IZ21 702 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 RASGEF1CQ8N431 466 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 MAIP1Q8WWC4 291 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 ASB12Q8WXK4 309 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 NTAN1Q96AB6 310 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 RAB7BQ96AH8 199 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 RNF25Q96BH1 459 aaPredicted RBP10.41□□□□□ -0.74
NEDD8-202ENST00000396828 HMCESQ96FZ2 354 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 ZNF578Q96N58 590 aaPredicted RBP10.41□□□□□ -0.74
NEDD8-202ENST00000396828 PEBP4Q96S96 227 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 IL12RB2Q99665 862 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 SNRNP25Q9BV90 132 aaKnown RBP10.41□□□□□ -0.74
NEDD8-202ENST00000396828 MAK16Q9BXY0 300 aaKnown RBP10.41□□□□□ -0.74
NEDD8-202ENST00000396828 SEMA4CQ9C0C4 833 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 L2HGDHQ9H9P8 463 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 LHX3Q9UBR4 397 aa10.41□□□□□ -0.74
NEDD8-202ENST00000396828 APOBEC3BQ9UH17 382 aaKnown RBP10.41□□□□□ -0.74
NEDD8-202ENST00000396828 RABGEF1Q9UJ41 708 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms