RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ROR2Q01974 943 aaKnown RBP10.35□□□□□ -0.75
COL6A3-205ENST00000392004 SULT2A1Q06520 285 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 WASHC2DQ5SRD0 308 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 NCBP2-AS2Q69YL0 99 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 TRNP1Q6NT89 227 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 ASRGL1Q7L266 308 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 AP2M1Q96CW1 435 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 PHF21BQ96EK2 531 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 NECTIN4Q96NY8 510 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 GBP5Q96PP8 586 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 TMEM237Q96Q45 408 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 MYADMQ96S97 322 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 DPEP2Q9H4A9 486 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 ZFYVE1Q9HBF4 777 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 POLMQ9NP87 494 aaPredicted RBP10.35□□□□□ -0.75
COL6A3-205ENST00000392004 FZD3Q9NPG1 666 aa10.35□□□□□ -0.75
COL6A3-205ENST00000392004 EPOPA6NHQ4 379 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 IQCF5A8MTL0 148 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 SMAD6O43541 496 aaKnown RBP10.34□□□□□ -0.75
COL6A3-205ENST00000392004 CDK14O94921 469 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 PTPN3P26045 913 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 HOXC8P31273 242 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 SLC6A4P31645 630 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 ENPEPQ07075 957 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 ZNF252P-AS1Q0IIN9 211 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 PDCD2Q16342 344 aaPredicted RBP10.34□□□□□ -0.75
COL6A3-205ENST00000392004 DPYSL2Q16555 572 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 TMTC4Q5T4D3 741 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 NEPROQ6NW34 567 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 UNC5AQ6ZN44 842 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 KCNMB4Q86W47 210 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 INPP5DQ92835 1189 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 MCUR1Q96AQ8 359 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 FEM1CQ96JP0 617 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 MAGEB10Q96LZ2 347 aaPredicted RBP10.34□□□□□ -0.75
COL6A3-205ENST00000392004 SMIM14Q96QK8 99 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 FEM1AQ9BSK4 669 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 LRMDAQ9H2I8 198 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 CYLDQ9NQC7 956 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 SYBUQ9NX95 663 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 LRRC42Q9Y546 428 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 SEC16AO15027 2179 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 TCRBV21S2A2A0A5A6 115 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 RASGRP1O95267 797 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 HSPA4LO95757 839 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 SLC25A11Q02978 314 aaKnown RBP10.34□□□□□ -0.75
COL6A3-205ENST00000392004 RCN2Q14257 317 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 FASTKD3Q14CZ7 662 aaKnown RBP10.34□□□□□ -0.75
COL6A3-205ENST00000392004 UBAP2Q5T6F2 1119 aaKnown RBP10.34□□□□□ -0.75
COL6A3-205ENST00000392004 CWF19L1Q69YN2 538 aaKnown RBP10.34□□□□□ -0.75
COL6A3-205ENST00000392004 ANKRD54Q6NXT1 300 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 NPWQ8N729 165 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 CMASQ8NFW8 434 aaPredicted RBP10.34□□□□□ -0.75
COL6A3-205ENST00000392004 PIP4K2CQ8TBX8 421 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 PNPLA8Q9NP80 782 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 FNIP2Q9P278 1114 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 NKX1-2Q9UD57 310 aaPredicted RBP10.34□□□□□ -0.75
COL6A3-205ENST00000392004 KIF13BQ9NQT8 1826 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 FOXO6A8MYZ6 492 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 INSIG1O15503 277 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 TROVE2P10155 538 aaKnown RBP eCLIP10.34□□□□□ -0.75
COL6A3-205ENST00000392004 LAMP2P13473 410 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 SOX11P35716 441 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 DNAJC3Q13217 504 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 PRKG2Q13237 762 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 PTPRNQ16849 979 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 CHST15Q7LFX5 561 aaPredicted RBP10.34□□□□□ -0.75
COL6A3-205ENST00000392004 RPLP0P6Q8NHW5 317 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 FGF14Q92915 247 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 CD101Q93033 1021 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 MED8Q96G25 268 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 TRABDQ9H4I3 376 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 GPAMQ9HCL2 828 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 KCTD3Q9Y597 815 aa10.34□□□□□ -0.75
COL6A3-205ENST00000392004 POP4O95707 220 aaKnown RBP10.33□□□□□ -0.76
COL6A3-205ENST00000392004 ESRRBO95718 433 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 PTPN7P35236 360 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 SPRP35270 261 aaPredicted RBP10.33□□□□□ -0.76
COL6A3-205ENST00000392004 ABRQ12979 859 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 C1orf53Q5VUE5 145 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 ANGPTL8Q6UXH0 198 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 SYTL1Q8IYJ3 562 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 ZNF557Q8N988 423 aaPredicted RBP10.33□□□□□ -0.76
COL6A3-205ENST00000392004 FAM13CQ8NE31 585 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 FOXQ1Q9C009 403 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 DCLRE1BQ9H816 532 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 IMP3Q9NV31 184 aaKnown RBP10.33□□□□□ -0.76
COL6A3-205ENST00000392004 PRKAG3Q9UGI9 489 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 ZFP69BQ9UJL9 534 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 PHTF1Q9UMS5 762 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 FAM163BP0C2L3 166 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 CYP2A6P11509 494 aaPredicted RBP10.33□□□□□ -0.76
COL6A3-205ENST00000392004 HNF4AP41235 474 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 ZBTB17Q13105 803 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 KBTBD12Q3ZCT8 623 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 SYDE1Q6ZW31 735 aaPredicted RBP10.33□□□□□ -0.76
COL6A3-205ENST00000392004 CHST14Q8NCH0 376 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 OR13C4Q8NGS5 318 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 TMEM159Q96B96 161 aa10.33□□□□□ -0.76
COL6A3-205ENST00000392004 DNAJC1Q96KC8 554 aaKnown RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms