RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CEP41Q9BYV8 373 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 PITPNM3Q9BZ71 974 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 SP110Q9HB58 689 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 CAPN7Q9Y6W3 813 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 KIAA1549LQ6ZVL6 1849 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 FAM159BA6NKW6 160 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 CXorf49A8MYA2 514 aaPredicted RBP10.27□□□□□ -0.77
VPS53-202ENST00000389040 K7ESF4 209 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 MATN3O15232 486 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 KRT37O76014 449 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 POP4O95707 220 aaKnown RBP10.27□□□□□ -0.77
VPS53-202ENST00000389040 CD160O95971 181 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 PSMB4P28070 264 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 CTSOP43234 321 aaPredicted RBP10.27□□□□□ -0.77
VPS53-202ENST00000389040 SCTRP47872 440 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 RAD51Q06609 339 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 PPIDQ08752 370 aaKnown RBP10.27□□□□□ -0.77
VPS53-202ENST00000389040 ACCSLQ4AC99 568 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 LGSNQ5TDP6 509 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 FAM47EQ6ZV65 393 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 TEX26Q8N6G2 289 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 TMIEQ8NEW7 156 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 HCAR2Q8TDS4 363 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 LRRC8CQ8TDW0 803 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 OR8D1Q8WZ84 308 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 PTPRN2Q92932 1015 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 STAMBPL1Q96FJ0 436 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 APOPT1Q96IL0 206 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 CELF6Q96J87 481 aaKnown RBP10.27□□□□□ -0.77
VPS53-202ENST00000389040 SERAC1Q96JX3 654 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 PSKH2Q96QS6 385 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 VAT1Q99536 393 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 KLF6Q99612 283 aaPredicted RBP10.27□□□□□ -0.77
VPS53-202ENST00000389040 TRIM56Q9BRZ2 755 aaKnown RBP10.27□□□□□ -0.77
VPS53-202ENST00000389040 OSBPL1AQ9BXW6 950 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 RSPH9Q9H1X1 276 aaPredicted RBP10.27□□□□□ -0.77
VPS53-202ENST00000389040 PRSS16Q9NQE7 514 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 WDR70Q9NW82 654 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 SEPT3Q9UH03 358 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 ARL2BPQ9Y2Y0 163 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 PCDHGA2Q9Y5H1 932 aa10.27□□□□□ -0.77
VPS53-202ENST00000389040 SDR42E2A6NKP2 422 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 WASH3PC4AMC7 463 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 KCNK1O00180 336 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 FAM155BO75949 473 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 ADH1BP00325 375 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 MT-CO1P00395 513 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 PRNPP04156 253 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 SNRPAP09012 282 aaKnown RBP10.26□□□□□ -0.77
VPS53-202ENST00000389040 TDGF1P13385 188 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 ADRA1DP25100 572 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 PTPN3P26045 913 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 SATB1Q01826 763 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 SLC18A2Q05940 514 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 ANGPT1Q15389 498 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 CARD16Q5EG05 197 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 MARC1Q5VT66 337 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 STEAP4Q687X5 459 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 C22orf39Q6P5X5 142 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 PKN3Q6P5Z2 889 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 TRMT10BQ6PF06 316 aaKnown RBP10.26□□□□□ -0.77
VPS53-202ENST00000389040 ZC3H14Q6PJT7 736 aaKnown RBP10.26□□□□□ -0.77
VPS53-202ENST00000389040 TMEM92Q6UXU6 159 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 SH2D5Q6ZV89 423 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 LONP2Q86WA8 852 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 OR2AP1Q8NGE2 309 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 CPEB1Q9BZB8 566 aaKnown RBP10.26□□□□□ -0.77
VPS53-202ENST00000389040 SMYD2Q9NRG4 433 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 ZSCAN32Q9NX65 697 aa10.26□□□□□ -0.77
VPS53-202ENST00000389040 KLHL8Q9P2G9 620 aaPredicted RBP10.26□□□□□ -0.77
VPS53-202ENST00000389040 A0A1W2PQ67 120 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 TTC34A8MYJ7 566 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 TRIM49D1C9J1S8 452 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 C1QTNF3-AMACRE9PGA6 284 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 H0YHG0 523 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 J3KR12 359 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 ZNF821O75541 412 aaPredicted RBP10.25□□□□□ -0.77
VPS53-202ENST00000389040 KRT38O76015 456 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 IGLV3-19P01714 112 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 GLDCP23378 1020 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 OXTRP30559 389 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 STK19P49842 368 aaPredicted RBP10.25□□□□□ -0.77
VPS53-202ENST00000389040 NEK3P51956 506 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 LBRQ14739 615 aaKnown RBP10.25□□□□□ -0.77
VPS53-202ENST00000389040 USP39Q53GS9 565 aaKnown RBP10.25□□□□□ -0.77
VPS53-202ENST00000389040 ZNF776Q68DI1 518 aaPredicted RBP10.25□□□□□ -0.77
VPS53-202ENST00000389040 CASC4Q6P4E1 433 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 LINGO4Q6UY18 593 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 USP30Q70CQ3 517 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 CYS1Q717R9 158 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 PID1Q7Z2X4 250 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 KBTBD6Q86V97 674 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 WDR5BQ86VZ2 330 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 TMPRSS6Q8IU80 811 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 CCNJLQ8IV13 435 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 MAML2Q8IZL2 1156 aaPredicted RBP10.25□□□□□ -0.77
VPS53-202ENST00000389040 OR2A12Q8NGT7 310 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 MTBPQ96DY7 904 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 MRGPRX1Q96LB2 322 aa10.25□□□□□ -0.77
VPS53-202ENST00000389040 TUBGCP5Q96RT8 1024 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms