RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 PPIL1Q9Y3C6 166 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 HS3ST3A1Q9Y663 406 aa13.41□□□□□ -0.26
VPS28-202ENST00000377348 ASCC3Q8N3C0 2202 aaKnown RBP13.41□□□□□ -0.26
VPS28-202ENST00000377348 A0A0J9YYE9 177 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 FPGTO14772 594 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 TM4SF5O14894 197 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 PMPCBO75439 489 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 HEXIM1O94992 359 aaKnown RBP13.4□□□□□ -0.26
VPS28-202ENST00000377348 TRBC1P01850 177 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 PCCBP05166 539 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 CYP2A6P11509 494 aaPredicted RBP13.4□□□□□ -0.26
VPS28-202ENST00000377348 CXCR5P32302 372 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 QPCTQ16769 361 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 ZNF569Q5MCW4 686 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 CRTC1Q6UUV9 634 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 KYAT3Q6YP21 454 aaKnown RBP13.4□□□□□ -0.26
VPS28-202ENST00000377348 USP45Q70EL2 814 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 SLC35F6Q8N357 371 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 TTC13Q8NBP0 860 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 PLA2G15Q8NCC3 412 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 OXNAD1Q96HP4 312 aaPredicted RBP13.4□□□□□ -0.26
VPS28-202ENST00000377348 VAT1Q99536 393 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 GORASP1Q9BQQ3 440 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 RTKNQ9BST9 563 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 USP29Q9HBJ7 922 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 TM7SF3Q9NS93 570 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 RSPH14Q9UHP6 348 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 DNPEPQ9ULA0 475 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 CNOT1A5YKK6 2376 aaKnown RBP13.4□□□□□ -0.26
VPS28-202ENST00000377348 LRRK1Q38SD2 2015 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 TMEM131Q92545 1883 aa13.4□□□□□ -0.26
VPS28-202ENST00000377348 SPTBN2O15020 2390 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 CFAP69A5D8W1 941 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 CAPN8A6NHC0 703 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 MAGEC1O60732 1142 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 PIRTP0C851 137 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 CD59P13987 128 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 ETV3P41162 512 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 GDF10P55107 478 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 CDK18Q07002 472 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 CCDC173Q0VFZ6 552 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 OVGP1Q12889 678 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 PUM1Q14671 1186 aaKnown RBP eCLIP13.39□□□□□ -0.27
VPS28-202ENST00000377348 LRRC14Q15048 493 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 SHBQ15464 509 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 ANKRD20A2Q5SQ80 823 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 ANKRD20A1Q5TYW2 823 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 ANKRD20A3Q5VUR7 823 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 LRRC66Q68CR7 880 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 KDELC1Q6UW63 502 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 RFLNAQ6ZTI6 216 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 HSD11B1LQ7Z5J1 315 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 NDUFAF2Q8N183 169 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 PELI3Q8N2H9 469 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 FAM71DQ8N9W8 422 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 SLC35B2Q8TB61 432 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 CCDC110Q8TBZ0 833 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 UBE2Q2Q8WVN8 375 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 C1orf54Q8WWF1 131 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 COQ10AQ96MF6 247 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 FCRL5Q96RD9 977 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 ELF4Q99607 663 aaPredicted RBP13.39□□□□□ -0.27
VPS28-202ENST00000377348 FERMT1Q9BQL6 677 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 C1QTNF7Q9BXJ2 289 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 FAM153AQ9UHL3 310 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 TRHDEQ9UKU6 1024 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 CABIN1Q9Y6J0 2220 aa13.39□□□□□ -0.27
VPS28-202ENST00000377348 TP53BP1Q12888 1972 aaPredicted RBP13.38□□□□□ -0.27
VPS28-202ENST00000377348 A0A1B0GTQ1 180 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 ANKRD66B4E2M5 251 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 CEP104O60308 925 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 CLDN7O95471 211 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 ATP1A1P05023 1023 aaKnown RBP13.38□□□□□ -0.27
VPS28-202ENST00000377348 C1SP09871 688 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 SDHBP21912 280 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 KCNA4P22459 653 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 NFKBIAP25963 317 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 PSMB4P28070 264 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 RABIFP47224 123 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 CCT8P50990 548 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 WNT3AP56704 352 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 PFN3P60673 137 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 RPL26P61254 145 aaKnown RBP13.38□□□□□ -0.27
VPS28-202ENST00000377348 PTSQ03393 145 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 BNIP3Q12983 259 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 SNX1Q13596 522 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 PDE1CQ14123 709 aaPredicted RBP13.38□□□□□ -0.27
VPS28-202ENST00000377348 ARHGEF7Q14155 803 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 INPP5AQ14642 412 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 AGERQ15109 404 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 SIX1Q15475 284 aaPredicted RBP13.38□□□□□ -0.27
VPS28-202ENST00000377348 SLC14A2Q15849 920 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 ZNF542PQ5EBM4 170 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 NYAP1Q6ZVC0 841 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 GATAD2AQ86YP4 633 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 CBARPQ8N350 705 aaPredicted RBP13.38□□□□□ -0.27
VPS28-202ENST00000377348 DEFB124Q8NES8 71 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 NUS1Q96E22 293 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 IFT43Q96FT9 208 aa13.38□□□□□ -0.27
VPS28-202ENST00000377348 MRGPRX2Q96LB1 330 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms