RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 UNC45AQ9H3U1 944 aa2.24□□□□□ -2.05
VPS13A-206ENST00000376646 EVA1AQ9H8M9 152 aa2.24□□□□□ -2.05
VPS13A-206ENST00000376646 MAP3K20Q9NYL2 800 aaKnown RBP2.24□□□□□ -2.05
VPS13A-206ENST00000376646 TBX20Q9UMR3 447 aa2.24□□□□□ -2.05
VPS13A-206ENST00000376646 CDC14AQ9UNH5 594 aa2.24□□□□□ -2.05
VPS13A-206ENST00000376646 GDAQ9Y2T3 454 aa2.24□□□□□ -2.05
VPS13A-206ENST00000376646 ADAM18Q9Y3Q7 739 aa2.24□□□□□ -2.05
VPS13A-206ENST00000376646 CYP46A1Q9Y6A2 500 aa2.24□□□□□ -2.05
VPS13A-206ENST00000376646 IGHV4OR15-8A0A075B7B6 117 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 FAM90A7PA6NKC0 464 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 SH2D7A6NKC9 451 aaPredicted RBP2.23□□□□□ -2.05
VPS13A-206ENST00000376646 FAM90A22PA8MWA6 464 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 FAM90A12PA8MX19 464 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 FAM90A23PA8MXZ1 464 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 B4E171 279 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 KLRF2D3W0D1 207 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 SOCS6O14544 535 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 NDUFS7O75251 213 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 PAK4O96013 591 aaPredicted RBP2.23□□□□□ -2.05
VPS13A-206ENST00000376646 LINC00271P0C7V0 271 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 ABCD3P28288 659 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 RYKP34925 604 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 PSMC2P35998 433 aaKnown RBP2.23□□□□□ -2.05
VPS13A-206ENST00000376646 TSPAN7P41732 249 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 FUT6P51993 359 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 CLDN2P57739 230 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 KRTAP10-5P60370 271 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 RPP30P78346 268 aaKnown RBP2.23□□□□□ -2.05
VPS13A-206ENST00000376646 TBL3Q12788 808 aaKnown RBP2.23□□□□□ -2.05
VPS13A-206ENST00000376646 RUNX2Q13950 521 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 EDRF1Q3B7T1 1238 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 ACAD10Q6JQN1 1059 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 FBXL22Q6P050 247 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 IL20RBQ6UXL0 311 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 C1orf122Q6ZSJ8 110 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 TUBA1AQ71U36 451 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 LRRC8DQ7L1W4 858 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 TBC1D1Q86TI0 1168 aaPredicted RBP2.23□□□□□ -2.05
VPS13A-206ENST00000376646 SFTPA2Q8IWL1 248 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 ODF3L1Q8IXM7 274 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 TSPYL6Q8N831 410 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 CNOT9Q92600 299 aaKnown RBP2.23□□□□□ -2.05
VPS13A-206ENST00000376646 HDAC2Q92769 488 aaKnown RBP2.23□□□□□ -2.05
VPS13A-206ENST00000376646 APOPT1Q96IL0 206 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 PGLYRP2Q96PD5 576 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 TUBA1CQ9BQE3 449 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 CSTL1Q9H114 145 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 TAOK3Q9H2K8 898 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 SCRT2Q9NQ03 307 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 CISD1Q9NZ45 108 aaKnown RBP2.23□□□□□ -2.05
VPS13A-206ENST00000376646 CNOT7Q9UIV1 285 aaKnown RBP2.23□□□□□ -2.05
VPS13A-206ENST00000376646 SUFUQ9UMX1 484 aa2.23□□□□□ -2.05
VPS13A-206ENST00000376646 A0A0G2JPF8 293 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 HNRNPCL3B7ZW38 293 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 ZNF587BE7ETH6 402 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 HNRNPCL1O60812 293 aaKnown RBP2.22□□□□□ -2.05
VPS13A-206ENST00000376646 CHRM4P08173 479 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 CFC1BP0CG36 223 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 CFC1P0CG37 223 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 HNRNPCL4P0DMR1 293 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 TNNT1P13805 278 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 KCNA5P22460 613 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 EIF2S3P41091 472 aaKnown RBP2.22□□□□□ -2.05
VPS13A-206ENST00000376646 ZNF155Q12901 538 aaPredicted RBP2.22□□□□□ -2.05
VPS13A-206ENST00000376646 RBM39Q14498 530 aaKnown RBP2.22□□□□□ -2.05
VPS13A-206ENST00000376646 NAA25Q14CX7 972 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 MMEL1Q495T6 779 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 ZNF667Q5HYK9 610 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 HIST2H2BCQ6DN03 193 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 HIST2H2BDQ6DRA6 164 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 WDR73Q6P4I2 378 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 SLC22A25Q6T423 547 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 KLHL24Q6TFL4 600 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 MARK2Q7KZI7 788 aaKnown RBP2.22□□□□□ -2.05
VPS13A-206ENST00000376646 ADGRG6Q86SQ4 1221 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 EXOC3L1Q86VI1 746 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 DCUN1D3Q8IWE4 304 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 CPXM2Q8N436 756 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 MAB21L3Q8N8X9 362 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 LMNTD1Q8N9Z9 388 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 LRRC8CQ8TDW0 803 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 TMEM255BQ8WV15 326 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 UCMAQ8WVF2 138 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 RUFY2Q8WXA3 655 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 RAB40AQ8WXH6 277 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 TANKQ92844 425 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 EPHX3Q9H6B9 360 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 ALKBH4Q9NXW9 302 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 AASSQ9UDR5 926 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 SLCO3A1Q9UIG8 710 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 PCDHGB5Q9Y5G0 923 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 A0A0U1RQF3 1178 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 HMGB1P1B2RPK0 211 aaPredicted RBP2.22□□□□□ -2.05
VPS13A-206ENST00000376646 EBAG9O00559 213 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 MID1O15344 667 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 RTN3O95197 1032 aaPredicted RBP2.22□□□□□ -2.05
VPS13A-206ENST00000376646 CGAP01215 116 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 ITGAXP20702 1163 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 CAPN3P20807 821 aa2.22□□□□□ -2.05
VPS13A-206ENST00000376646 PAFAH1B1P43034 410 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms