RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 IKZF3Q9UKT9 509 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 ERGIC3Q9Y282 383 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 RGPD5Q99666 1765 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 GJB1P08034 283 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 HOXB6P17509 224 aaKnown RBP11.46□□□□□ -0.57
PTPRF-203ENST00000372407 HIRAP54198 1017 aaPredicted RBP11.46□□□□□ -0.57
PTPRF-203ENST00000372407 METTL3Q86U44 580 aaKnown RBP11.46□□□□□ -0.57
PTPRF-203ENST00000372407 CUZD1Q86UP6 607 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 FAM47BQ8NA70 645 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 SUSD6Q92537 303 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 MAGEB10Q96LZ2 347 aaPredicted RBP11.46□□□□□ -0.57
PTPRF-203ENST00000372407 PLEKHG4BQ96PX9 1271 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 TSPAN18Q96SJ8 248 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 COPS8Q99627 209 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 CCDC28BQ9BUN5 200 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 B3GNT5Q9BYG0 378 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 ZDHHC6Q9H6R6 413 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 CAB39LQ9H9S4 337 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 CCNB1IP1Q9NPC3 277 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 CLN6Q9NWW5 311 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 COG5Q9UP83 839 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 DOT1LQ8TEK3 1739 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 PLCH1Q4KWH8 1693 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 BBIP1A8MTZ0 92 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 FAM47E-STBD1D6RA91 191 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 CLDN5O00501 218 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 TNFRSF21O75509 655 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 SLC22A3O75751 556 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 MTA2O94776 668 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 CSNK2BP67870 215 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 MRPS6P82932 125 aaKnown RBP11.46□□□□□ -0.58
PTPRF-203ENST00000372407 GPR107Q5VW38 600 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 ADGRD1Q6QNK2 874 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 CYP20A1Q6UW02 462 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 FAM20CQ8IXL6 584 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 SLC4A11Q8NBS3 891 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 ZFP28Q8NHY6 868 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 EXOC2Q96KP1 924 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 SPATA5L1Q9BVQ7 753 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.46□□□□□ -0.581e-6■■□□□ 13.5
PTPRF-203ENST00000372407 CORO2BQ9UQ03 480 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 DERAQ9Y315 318 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 PCDHB9Q9Y5E1 797 aa11.46□□□□□ -0.58
PTPRF-203ENST00000372407 CARNS1A5YM72 827 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 MOXD2PA6NHM9 499 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 RFXANKO14593 260 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 ADCY6O43306 1168 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 UMPSP11172 480 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 DBTP11182 482 aaKnown RBP11.45□□□□□ -0.58
PTPRF-203ENST00000372407 WARSP23381 471 aaKnown RBP11.45□□□□□ -0.58
PTPRF-203ENST00000372407 CRYBB1P53674 252 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-203ENST00000372407 LSM3P62310 102 aaKnown RBP11.45□□□□□ -0.58
PTPRF-203ENST00000372407 PFKPQ01813 784 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 HLA-DQA1Q5Y7H0 255 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 BHLHB9Q6PI77 547 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 DOK6Q6PKX4 331 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 ARMC8Q8IUR7 673 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 POC5Q8NA72 575 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 VMP1Q96GC9 406 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 C1QTNF7Q9BXJ2 289 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 UBAP1Q9NZ09 502 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 ANGPT4Q9Y264 503 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 NWD2Q9ULI1 1742 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 SLC9A3R1O14745 358 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-203ENST00000372407 PPP1R11O60927 126 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-203ENST00000372407 OR6B1O95007 311 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 CCNE2O96020 404 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 LINC00032P0C843 101 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 SPIDRQ14159 915 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 NR1D2Q14995 579 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 PPM1LQ5SGD2 360 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 PERM1Q5SV97 790 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 MZT2BQ6NZ67 158 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 HIPK1Q86Z02 1210 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 OR52E6Q96RD3 313 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 BPIFA1Q9NP55 256 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 AGO1Q9UL18 857 aaKnown RBP11.45□□□□□ -0.58
PTPRF-203ENST00000372407 TLR5O60602 858 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 MAGEC1O60732 1142 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 C4BPAP04003 597 aaKnown RBP11.45□□□□□ -0.58
PTPRF-203ENST00000372407 PPIBP23284 216 aaKnown RBP11.45□□□□□ -0.58
PTPRF-203ENST00000372407 GSTM5P46439 218 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 NOMO2Q5JPE7 1267 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 PPP1R15BQ5SWA1 713 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 LYPLAL1Q5VWZ2 237 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 MON1BQ7L1V2 547 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 PAGE2Q7Z2X7 111 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 ZC3H7AQ8IWR0 971 aaKnown RBP11.45□□□□□ -0.58
PTPRF-203ENST00000372407 NETO2Q8NC67 525 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 MCRS1Q96EZ8 462 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 LINGO1Q96FE5 620 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 FAIM2Q9BWQ8 316 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 RNF208Q9H0X6 261 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 S100A14Q9HCY8 104 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 HMX1Q9NP08 348 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-203ENST00000372407 MAGEL2Q9UJ55 1249 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 GIT1Q9Y2X7 761 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 FADS3Q9Y5Q0 445 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 CILPO75339 1184 aa11.45□□□□□ -0.58
PTPRF-203ENST00000372407 CST3P01034 146 aaPredicted RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms