RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 GLRA4Q5JXX5 417 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 ZNF449Q6P9G9 518 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 SLC23A3Q6PIS1 610 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 DDX53Q86TM3 631 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 CHSY1Q86X52 802 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 ZDHHC17Q8IUH5 632 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 SLC41A1Q8IVJ1 513 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 CCDC117Q8IWD4 279 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 EXOC8Q8IYI6 725 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 LRRC34Q8IZ02 419 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 ZNF567Q8N184 647 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 DNAJC5GQ8N7S2 189 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 STKLD1Q8NE28 680 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 SLC2A14Q8TDB8 520 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 STON2Q8WXE9 905 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 DLG3Q92796 817 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 TAAR9Q96RI9 348 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 CNPY3Q9BT09 278 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 TTLL2Q9BWV7 592 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 BRD8Q9H0E9 1235 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 ABCF3Q9NUQ8 709 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 GPATCH2LQ9NWQ4 482 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 CTTNBP2NLQ9P2B4 639 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 IGSF9Q9P2J2 1179 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 RCOR3Q9P2K3 495 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 EVLQ9UI08 416 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 ZHX1Q9UKY1 873 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 DSEQ9UL01 958 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 OGDHLQ9ULD0 1010 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 PADI3Q9ULW8 664 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 A0A1W2PQ45 241 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 A0A1W2PQY0 241 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 PRSS38A1L453 326 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 MANSC4A6NHS7 340 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 MOSPD3O75425 235 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 PRLP01236 227 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 RNASE1P07998 156 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 KRT3P12035 628 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 TNNI1P19237 187 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 GPD1P21695 349 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 PTPN3P26045 913 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 SSTR1P30872 391 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 MLH1P40692 756 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 MAGEA4P43358 317 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 PGGT1BP53609 377 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 EPHA5P54756 1037 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 PLTPP55058 493 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 MANFP55145 182 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 BPIFB4P59827 614 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 ACTN3Q08043 901 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 MESP2Q0VG99 397 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 BST2Q10589 180 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 MYO1EQ12965 1108 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 CAMK1Q14012 370 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 TFDP1Q14186 410 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 PCLAFQ15004 111 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 KYAT1Q16773 422 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 WLSQ5T9L3 541 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 WSCD1Q658N2 575 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 NOTUMQ6P988 496 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 ANKRD33Q7Z3H0 272 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 PIGZQ86VD9 579 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 TCEAL8Q8IYN2 117 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 CENPLQ8N0S6 344 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 OR13J1Q8NGT2 312 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 UHMK1Q8TAS1 419 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 ARRDC2Q8TBH0 407 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 RSPH1Q8WYR4 309 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 HDAC11Q96DB2 347 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 HSFY1Q96LI6 401 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 PRICKLE1Q96MT3 831 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 ACAP3Q96P50 834 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 CCDC106Q9BWC9 280 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 CAPS2Q9BXY5 557 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 RPF1Q9H9Y2 349 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 OBP2AQ9NY56 170 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 KIAA1257Q9ULG3 409 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 APOBEC2Q9Y235 224 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 PTPN22Q9Y2R2 807 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 MDC1Q14676 2089 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 TCRBV5S2A0A599 114 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 GOLGA6CA6NDK9 693 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 FAM47E-STBD1D6RA91 191 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 MYO1CO00159 1063 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 EDF1O60869 148 aaKnown RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 PGK1P00558 417 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 CCDC172P0C7W6 258 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 GOLGA6DP0CG33 693 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 GHRP10912 638 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 SDHAP31040 664 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 SLC6A4P31645 630 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 NSFP46459 744 aaKnown RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 CTCFP49711 727 aaPredicted RBP2.35□□□□□ -2.03
VPS54-202ENST00000354504 GATMP50440 423 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 TNNC1P63316 161 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 PHC1P78364 1004 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 RBP5P82980 135 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 IKZF1Q13422 519 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 SNX1Q13596 522 aa2.35□□□□□ -2.03
VPS54-202ENST00000354504 CLUL1Q15846 466 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms