RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 MGAT1P26572 445 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 SLC6A3Q01959 620 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 DNAJA4Q8WW22 397 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-202ENST00000347401 RHBDF1Q96CC6 855 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 EXD2Q9NVH0 621 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 KDELR1P24390 212 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 ZNF143P52747 638 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-202ENST00000347401 C1orf189Q5VU69 101 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 FRMD6Q96NE9 622 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 CCDC115Q96NT0 180 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 CCDC177Q9NQR7 707 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-202ENST00000347401 RPTORQ8N122 1335 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 PDCD5O14737 125 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 DEPDC5O75140 1603 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 ALDH9A1P49189 494 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 IL18R1Q13478 541 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 SHQ1Q6PI26 577 aaKnown RBP13.34□□□□□ -0.27
COL6A3-202ENST00000347401 KCNT2Q6UVM3 1135 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 CD44P16070 742 aaKnown RBP13.34□□□□□ -0.27
COL6A3-202ENST00000347401 CRATP43155 626 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 ADAM17P78536 824 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 GPR162Q16538 588 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 STXBP5Q5T5C0 1151 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 GRHL2Q6ISB3 625 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 ANKRD26P1Q6NSI1 321 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 SV2AQ7L0J3 742 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 TRABD2AQ86V40 505 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 PPP1R16AQ96I34 528 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 MROH8Q9H579 483 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 SLC25A12O75746 678 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 IRAK1BP1Q5VVH5 260 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 SPESP1Q6UW49 350 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 TMEM110Q86TL2 294 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 ARL10Q8N8L6 244 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 POPDC2Q9HBU9 364 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 CDH22Q9UJ99 828 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 MIA3Q5JRA6 1907 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 CYB561D2O14569 222 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 TYMPP19971 482 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 RORCP51449 518 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 RBBP4Q09028 425 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 FAM71AQ8IYT1 594 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 TMX2Q9Y320 296 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 OR1E1P30953 314 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 ZNF697Q5TEC3 545 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 WDR59Q6PJI9 974 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 SLC5A5Q92911 643 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 C2orf49Q9BVC5 232 aaPredicted RBP13.34□□□□□ -0.27
COL6A3-202ENST00000347401 INTS10Q9NVR2 710 aaKnown RBP13.34□□□□□ -0.27
COL6A3-202ENST00000347401 ROBO2Q9HCK4 1378 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 GPR75-ASB3A0A0A6YYF3 556 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 CSF1RP07333 972 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 FGFR1P11362 822 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 SERPINA4P29622 427 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 CRY1Q16526 586 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 USP49Q70CQ1 688 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 PTAR1Q7Z6K3 402 aaPredicted RBP13.34□□□□□ -0.27
COL6A3-202ENST00000347401 MAF1Q9H063 256 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 SLC6A15Q9H2J7 730 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 RHOJQ9H4E5 214 aa13.34□□□□□ -0.27
COL6A3-202ENST00000347401 EBNA1BP2Q99848 306 aaKnown RBP13.34□□□□□ -0.27
COL6A3-202ENST00000347401 THUMPD1Q9NXG2 353 aaKnown RBP13.34□□□□□ -0.27
COL6A3-202ENST00000347401 ANKDD1BA6NHY2 528 aa13.33□□□□□ -0.27
COL6A3-202ENST00000347401 LIASO43766 372 aa13.33□□□□□ -0.27
COL6A3-202ENST00000347401 B3GAT3O94766 335 aa13.33□□□□□ -0.27
COL6A3-202ENST00000347401 PET100P0DJ07 73 aa13.33□□□□□ -0.27
COL6A3-202ENST00000347401 NOS2P35228 1153 aa13.33□□□□□ -0.27
COL6A3-202ENST00000347401 OAZ1P54368 228 aa13.33□□□□□ -0.27
COL6A3-202ENST00000347401 PKNOX1P55347 436 aa13.33□□□□□ -0.27
COL6A3-202ENST00000347401 GCNT7Q6ZNI0 430 aa13.33□□□□□ -0.27
COL6A3-202ENST00000347401 UNC93AQ86WB7 457 aa13.33□□□□□ -0.27
COL6A3-202ENST00000347401 DSELQ8IZU8 1212 aa13.33□□□□□ -0.27
COL6A3-202ENST00000347401 DAW1Q8N136 415 aa13.33□□□□□ -0.27
COL6A3-202ENST00000347401 TMEM169Q96HH4 297 aa13.33□□□□□ -0.27
COL6A3-202ENST00000347401 DIRAS2Q96HU8 199 aa13.33□□□□□ -0.27
COL6A3-202ENST00000347401 LMAN2LQ9H0V9 348 aa13.33□□□□□ -0.27
COL6A3-202ENST00000347401 RPLP0P05388 317 aaKnown RBP13.33□□□□□ -0.28
COL6A3-202ENST00000347401 TMEM119Q4V9L6 283 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 PIF1Q9H611 641 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 C14orf105Q9NVL8 296 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 DNAAF2Q9NVR5 837 aaKnown RBP13.33□□□□□ -0.28
COL6A3-202ENST00000347401 SPEF1Q9Y4P9 236 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 PITPNM1O00562 1244 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 IGFBP5P24593 272 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 MTHFRP42898 656 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 SPIBQ01892 262 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 BST1Q10588 318 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 ZNF280DQ6N043 979 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 GPR180Q86V85 440 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 IQCKQ8N0W5 287 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 LINC00471Q8N535 108 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 KIAA0895Q8NCT3 520 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 LPCAT1Q8NF37 534 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 GPATCH1Q9BRR8 931 aaKnown RBP13.33□□□□□ -0.28
COL6A3-202ENST00000347401 CHMP1AQ9HD42 196 aaPredicted RBP13.33□□□□□ -0.28
COL6A3-202ENST00000347401 PCDHGB7Q9Y5F8 929 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 PGRP06401 933 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 EPHB3P54753 998 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 NAGLUP54802 743 aa13.33□□□□□ -0.28
COL6A3-202ENST00000347401 ANTXR2P58335 489 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms