RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 SMCPP49901 116 aaPredicted RBP9.29□□□□□ -0.92
ATG4A-202ENST00000345734 PGGT1BP53609 377 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 MPP1Q00013 466 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 CREMQ03060 361 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 OVGP1Q12889 678 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 CTBP1Q13363 440 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 PPIGQ13427 754 aaKnown RBP eCLIP9.29□□□□□ -0.92
ATG4A-202ENST00000345734 DLG2Q15700 870 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 PREPLQ4J6C6 727 aaPredicted RBP9.29□□□□□ -0.92
ATG4A-202ENST00000345734 FSCBQ5H9T9 825 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 STXBP5Q5T5C0 1151 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 N4BP2L1Q5TBK1 243 aaPredicted RBP9.29□□□□□ -0.92
ATG4A-202ENST00000345734 RNF219Q5W0B1 726 aaPredicted RBP9.29□□□□□ -0.92
ATG4A-202ENST00000345734 CXorf57Q6NSI4 855 aaKnown RBP9.29□□□□□ -0.92
ATG4A-202ENST00000345734 TRPM8Q7Z2W7 1104 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 SPRED2Q7Z698 418 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 UBE2Q1Q7Z7E8 422 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 TRIM74Q86UV6 250 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 TRIM73Q86UV7 250 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 HERC6Q8IVU3 1022 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 DENND6AQ8IWF6 608 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 GPR65Q8IYL9 337 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 MAB21L3Q8N8X9 362 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 OR13H1Q8NG92 308 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 ACMSDQ8TDX5 336 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 SLC22A17Q8WUG5 538 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 GRAMD1AQ96CP6 724 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 EXOC2Q96KP1 924 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 TCF25Q9BQ70 676 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 LRRC3Q9BY71 257 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 MAFFQ9ULX9 164 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 ARL2BPQ9Y2Y0 163 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 PRRC2BQ5JSZ5 2229 aaKnown RBP9.29□□□□□ -0.92
ATG4A-202ENST00000345734 LOC285095A0A1B0GVY8 99 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 CBX4O00257 560 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 CHUKO15111 745 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 GSRP00390 522 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 LRG1P02750 347 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 AHSGP02765 367 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 PRKCGP05129 697 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 DNAJB1P25685 340 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 MAGEA12P43365 314 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 LIG3P49916 1009 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 SERPINB8P50452 374 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 CSE1LP55060 971 aaKnown RBP9.29□□□□□ -0.92
ATG4A-202ENST00000345734 C1QTNF8P60827 252 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 GALNT3Q14435 633 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 PLPP4Q5VZY2 271 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 PLD6Q8N2A8 252 aaKnown RBP9.29□□□□□ -0.92
ATG4A-202ENST00000345734 CARNMT1Q8N4J0 409 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 PNPLA1Q8N8W4 532 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 KREMEN2Q8NCW0 462 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 GTPBP3Q969Y2 492 aaKnown RBP9.29□□□□□ -0.92
ATG4A-202ENST00000345734 ISL2Q96A47 359 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 VPS39Q96JC1 886 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 ZNF599Q96NL3 588 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 CNTNAP3BQ96NU0 1288 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 TSSK1BQ9BXA7 367 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 ACE2Q9BYF1 805 aaPredicted RBP9.29□□□□□ -0.92
ATG4A-202ENST00000345734 CNTNAP3Q9BZ76 1288 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 MUC3BQ9H195 1237 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 RETREG1Q9H6L5 497 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 NOD2Q9HC29 1040 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 UBA2Q9UBT2 640 aaPredicted RBP9.29□□□□□ -0.92
ATG4A-202ENST00000345734 STOML2Q9UJZ1 356 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 TBC1D30Q9Y2I9 924 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 KCTD3Q9Y597 815 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 TRANK1O15050 2925 aa9.29□□□□□ -0.92
ATG4A-202ENST00000345734 CCL22O00626 93 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 CCL16O15467 120 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 SNAP91O60641 907 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 GLRA3O75311 464 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 C1RP00736 705 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 BPGMP07738 259 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 EDN3P14138 238 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 SAT1P21673 171 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 SLC1A2P43004 574 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 ARF5P84085 180 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 IRF9Q00978 393 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 GRM3Q14832 879 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 CYTH1Q15438 398 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 CHI3L2Q15782 390 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 CCDC85BQ15834 202 aaPredicted RBP9.28□□□□□ -0.92
ATG4A-202ENST00000345734 PABPC1LQ4VXU2 614 aaKnown RBP9.28□□□□□ -0.92
ATG4A-202ENST00000345734 FIGNL1Q6PIW4 674 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 LINGO4Q6UY18 593 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 Q6ZNB5 142 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 SETD3Q86TU7 594 aaPredicted RBP9.28□□□□□ -0.92
ATG4A-202ENST00000345734 ZC3HC1Q86WB0 502 aaKnown RBP9.28□□□□□ -0.92
ATG4A-202ENST00000345734 NUDCD3Q8IVD9 361 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 CNTN4Q8IWV2 1026 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 OR13J1Q8NGT2 312 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 WFDC5Q8TCV5 224 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 C10orf82Q8WW14 230 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 RAD9AQ99638 391 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 DDX50Q9BQ39 737 aaKnown RBP9.28□□□□□ -0.92
ATG4A-202ENST00000345734 MGME1Q9BQP7 344 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 CINPQ9BW66 212 aaPredicted RBP9.28□□□□□ -0.92
ATG4A-202ENST00000345734 TMEM216Q9P0N5 145 aa9.28□□□□□ -0.92
ATG4A-202ENST00000345734 SIRPGQ9P1W8 387 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms