RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 RABL3Q5HYI8 236 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 TMIGD2Q96BF3 282 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 OLFM1Q99784 485 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 KIAA1217Q5T5P2 1943 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 G3V2L1 256 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 PIRO00625 290 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 DPYSL4O14531 572 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 KLF11O14901 512 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 PIP5K1BO14986 540 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 CLOCKO15516 846 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 CCNT2O60583 730 aaKnown RBP11.97□□□□□ -0.49
USP1-201ENST00000339950 GABRB3P28472 473 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 RENBPP51606 427 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 CCR3P51677 355 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 KCNQ1P51787 676 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 TMEM214Q6NUQ4 689 aaKnown RBP11.97□□□□□ -0.49
USP1-201ENST00000339950 C11orf74Q86VG3 221 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 OR10T2Q8NGX3 314 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 LRCH3Q96II8 777 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 SPATA16Q9BXB7 569 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 RERGLQ9H628 205 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 ZNF229Q9UJW7 825 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 VPS4AQ9UN37 437 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 NDUFAF1Q9Y375 327 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 UPK3BL1B0FP48 263 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 UPK3BL2E5RIL1 263 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 MLNP12872 115 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 ADSLP30566 484 aaPredicted RBP11.97□□□□□ -0.49
USP1-201ENST00000339950 DIO3P55073 304 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 CASP9P55211 416 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 MRPS6P82932 125 aaKnown RBP11.97□□□□□ -0.49
USP1-201ENST00000339950 NIPAL4Q0D2K0 466 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 TCEA2Q15560 299 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 CCDC92Q53HC0 331 aaPredicted RBP11.97□□□□□ -0.49
USP1-201ENST00000339950 GPR107Q5VW38 600 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 FOXB2Q5VYV0 432 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 EPGNQ6UW88 154 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 DET1Q7L5Y6 550 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 ZNF280BQ86YH2 543 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 TSPAN14Q8NG11 270 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 FAM110BQ8TC76 370 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 METTL6Q8TCB7 284 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 TRAPPC9Q96Q05 1148 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 RTKNQ9BST9 563 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 CINPQ9BW66 212 aaPredicted RBP11.97□□□□□ -0.49
USP1-201ENST00000339950 ADAMTS10Q9H324 1103 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 FLRT1Q9NZU1 646 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 CROCCQ5TZA2 2017 aa11.97□□□□□ -0.49
USP1-201ENST00000339950 NPEPPSL1A6NEC2 478 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 NCAM2O15394 837 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 S100BP04271 92 aaPredicted RBP11.96□□□□□ -0.49
USP1-201ENST00000339950 AGTR2P50052 363 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 CRYBB1P53674 252 aaPredicted RBP11.96□□□□□ -0.49
USP1-201ENST00000339950 C1QTNF8P60827 252 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 LAPTM4AQ15012 233 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 GSTA3Q16772 222 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 ZYG11AQ6WRX3 759 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 TPGS1Q6ZTW0 290 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.96□□□□□ -0.49
USP1-201ENST00000339950 RP9Q8TA86 221 aaKnown RBP11.96□□□□□ -0.49
USP1-201ENST00000339950 HGH1Q9BTY7 390 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 ATP13A1Q9HD20 1204 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 TBC1D23Q9NUY8 699 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 SLC30A1Q9Y6M5 507 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 A8MT66 165 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 TLR5O60602 858 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 GPR32O75388 356 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 IPO13O94829 963 aaKnown RBP11.96□□□□□ -0.49
USP1-201ENST00000339950 FYNP06241 537 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 SLC2A4P14672 509 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 TRAF2Q12933 501 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 ZNF792Q3KQV3 632 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 GDF6Q6KF10 455 aaPredicted RBP11.96□□□□□ -0.49
USP1-201ENST00000339950 MRNIPQ6NTE8 343 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 FBXL19Q6PCT2 694 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 IL27RAQ6UWB1 636 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 SZRD1Q7Z422 152 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 GLT6D1Q7Z4J2 308 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 HEATR4Q86WZ0 1026 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 KIAA2013Q8IYS2 634 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 HS6ST3Q8IZP7 471 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 ACTRT2Q8TDY3 377 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 PNPLA8Q9NP80 782 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 IGSF9Q9P2J2 1179 aa11.96□□□□□ -0.49
USP1-201ENST00000339950 MAGEB16A2A368 324 aa11.96□□□□□ -0.5
USP1-201ENST00000339950 MATN2O00339 956 aa11.96□□□□□ -0.5
USP1-201ENST00000339950 APOA4P06727 396 aa11.96□□□□□ -0.5
USP1-201ENST00000339950 CNPP09543 421 aaKnown RBP11.96□□□□□ -0.5
USP1-201ENST00000339950 TFPTP0C1Z6 253 aa11.96□□□□□ -0.5
USP1-201ENST00000339950 DMPKQ09013 629 aa11.96□□□□□ -0.5
USP1-201ENST00000339950 ARHGEF7Q14155 803 aa11.96□□□□□ -0.5
USP1-201ENST00000339950 GATA6Q92908 595 aa11.96□□□□□ -0.5
USP1-201ENST00000339950 ASIC4Q96FT7 647 aa11.96□□□□□ -0.5
USP1-201ENST00000339950 TSPAN17Q96FV3 270 aa11.96□□□□□ -0.5
USP1-201ENST00000339950 RMND5BQ96G75 393 aaPredicted RBP11.96□□□□□ -0.5
USP1-201ENST00000339950 STK39Q9UEW8 545 aa11.96□□□□□ -0.5
USP1-201ENST00000339950 TRMT6Q9UJA5 497 aaKnown RBP11.96□□□□□ -0.5
USP1-201ENST00000339950 TCAF1Q9Y4C2 921 aa11.96□□□□□ -0.5
USP1-201ENST00000339950 RAD54BQ9Y620 910 aa11.96□□□□□ -0.5
USP1-201ENST00000339950 A0A0D9SEW6 157 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms