RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 MAELQ96JY0 434 aaKnown RBP14.9□□□□□ -0.02
CLCNKA-201ENST00000331433 PRICKLE1Q96MT3 831 aaPredicted RBP14.9□□□□□ -0.02
CLCNKA-201ENST00000331433 SMIM14Q96QK8 99 aa14.9□□□□□ -0.02
CLCNKA-201ENST00000331433 TTLL2Q9BWV7 592 aa14.9□□□□□ -0.02
CLCNKA-201ENST00000331433 GKN1Q9NS71 199 aa14.9□□□□□ -0.02
CLCNKA-201ENST00000331433 COMMD8Q9NX08 183 aa14.9□□□□□ -0.02
CLCNKA-201ENST00000331433 LRCH1Q9Y2L9 728 aa14.9□□□□□ -0.02
CLCNKA-201ENST00000331433 TRPC5OSA6NMA1 111 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 H3BNC9 293 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 RPP40O75818 363 aaKnown RBP14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 UPP2O95045 317 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 KLKB1P03952 638 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 TIAL1Q01085 375 aaKnown RBP eCLIP14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 ZRSR2Q15696 482 aaKnown RBP14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 ACBD5Q5T8D3 534 aaPredicted RBP14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 AAGABQ6PD74 315 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 BRSK1Q8TDC3 778 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 C2orf15Q8WU43 125 aaKnown RBP14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 MIEF2Q96C03 454 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 CCDC126Q96EE4 140 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 ZNF840PA6NDX5 716 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 COCHO43405 550 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 PQBP1O60828 265 aaKnown RBP14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 SMNDC1O75940 238 aaKnown RBP eCLIP14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 SCNN1BP51168 640 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 C5orf22Q49AR2 442 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 FAM45BPQ6NSW5 357 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 FAM45AQ8TCE6 357 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 TRIB3Q96RU7 358 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 CDRT15Q96T59 188 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 MGME1Q9BQP7 344 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 MRPL9Q9BYD2 267 aaKnown RBP14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 MAGEH1Q9H213 219 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 SPO11Q9Y5K1 396 aa14.89□□□□□ -0.03
CLCNKA-201ENST00000331433 UBFD1O14562 309 aaKnown RBP14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 CFLARO15519 480 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 EPOP01588 193 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 FDXRP22570 491 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 MSX2P35548 267 aaPredicted RBP14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 SLC11A2P49281 568 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 CCL23P55773 120 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 KLC1Q07866 573 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 PPP1R3AQ16821 1122 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 LRRC36Q1X8D7 754 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 MRNIPQ6NTE8 343 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 DHDDSQ86SQ9 333 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 OR4L1Q8NH43 312 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 CEP70Q8NHQ1 597 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 ZNF599Q96NL3 588 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 TMEM175Q9BSA9 504 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 CINPQ9BW66 212 aaPredicted RBP14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 VN1R3Q9BXE9 311 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 GSTO2Q9H4Y5 243 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 CATSPERZQ9NTU4 200 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 UBA2Q9UBT2 640 aaPredicted RBP14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 SLC22A2O15244 555 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 TSPAN3O60637 253 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 NDST3O95803 873 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 MT-CO1P00395 513 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 IRF1P10914 325 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 ENO3P13929 434 aaPredicted RBP14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 THOP1P52888 689 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 CDH4P55283 916 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 PKNOX1P55347 436 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 OXCT1P55809 520 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 HECTD3Q5T447 861 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 CLEC6AQ6EIG7 209 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 ALG1LQ6GMV1 187 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 SLC8B1Q6J4K2 584 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 C16orf89Q6UX73 402 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 RNF148Q8N7C7 305 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 STON2Q8WXE9 905 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 JADE3Q92613 823 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 USP13Q92995 863 aaPredicted RBP14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 RMDN1Q96DB5 314 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 NPAS2Q99743 824 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 EML4Q9HC35 981 aaKnown RBP14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 POLR3BQ9NW08 1133 aaPredicted RBP14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 SEPT3Q9UH03 358 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 ADAMTS6Q9UKP5 1117 aa14.88□□□□□ -0.03
CLCNKA-201ENST00000331433 STX16-NPEPL1H3BU86 382 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 SCAMP3O14828 347 aaKnown RBP14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 LIN7AO14910 233 aaPredicted RBP14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 HOXA2O43364 376 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 SUPT7LO94864 414 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 SEC24AO95486 1093 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 CD1DP15813 335 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 PMLP29590 882 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 CORO1AP31146 461 aaKnown RBP14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 DPP6P42658 865 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 GK5Q6ZS86 529 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 C16orf59Q7L2K0 433 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 SETD3Q86TU7 594 aaPredicted RBP14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 SLC22A9Q8IVM8 553 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 LRRC43Q8N309 656 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 BBS5Q8N3I7 341 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 WBP2Q969T9 261 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 CDKN2AIPNLQ96HQ2 116 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 PSKH2Q96QS6 385 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 GEMIN8Q9NWZ8 242 aaKnown RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 179.7 ms