RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 NDRG2Q9UN36 371 aaKnown RBP10.2□□□□□ -0.78
CHD3-201ENST00000330494 SYN1P17600 705 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 ATP5F1P24539 256 aaPredicted RBP10.2□□□□□ -0.78
CHD3-201ENST00000330494 ZNF135P52742 658 aaPredicted RBP10.2□□□□□ -0.78
CHD3-201ENST00000330494 HK2P52789 917 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 LILRA4P59901 499 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 ZNF460Q14592 562 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 UBE2R2Q712K3 238 aaPredicted RBP10.2□□□□□ -0.78
CHD3-201ENST00000330494 CYP4Z2PQ8N1L4 340 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 POMGNT2Q8NAT1 580 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 C6orf62Q9GZU0 229 aaPredicted RBP10.2□□□□□ -0.78
CHD3-201ENST00000330494 DERAQ9Y315 318 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 POLR3HQ9Y535 204 aaPredicted RBP10.2□□□□□ -0.78
CHD3-201ENST00000330494 LMO7Q8WWI1 1683 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 FAM208AQ9UK61 1670 aaKnown RBP10.2□□□□□ -0.78
CHD3-201ENST00000330494 TRIM43BA6NCK2 446 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 OR6C75A6NL08 312 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 SNTNA6NMZ2 147 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 LSM1O15116 133 aaKnown RBP10.2□□□□□ -0.78
CHD3-201ENST00000330494 VPS4BO75351 444 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 ADH1CP00326 375 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 FTH1P02794 183 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 NTSP30990 170 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 ADRA1BP35368 520 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 CYP4F3Q08477 520 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 VARS2Q5ST30 1063 aaKnown RBP10.2□□□□□ -0.78
CHD3-201ENST00000330494 LPCAT2Q7L5N7 544 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 SKA1Q96BD8 255 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 FEM1CQ96JP0 617 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 HDHD2Q9H0R4 259 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 GLOD4Q9HC38 313 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 KCNK4Q9NYG8 393 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 PCDHGC4Q9Y5F7 938 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 AXIN1O15169 862 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 LRCH4O75427 683 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 SNRPB2P08579 225 aaKnown RBP10.2□□□□□ -0.78
CHD3-201ENST00000330494 CHST9Q7L1S5 443 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 CAPSLQ8WWF8 208 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 UPF1Q92900 1129 aaKnown RBP eCLIP10.2□□□□□ -0.787e-8■■■□□ 17.1
CHD3-201ENST00000330494 UGT2B28Q9BY64 529 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 GULP1Q9UBP9 304 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 STARD13Q9Y3M8 1113 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 TNPO3Q9Y5L0 923 aaKnown RBP10.2□□□□□ -0.78
CHD3-201ENST00000330494 RAI2Q9Y5P3 530 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 DNTTP04053 509 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 FAM58BPP0C7Q3 252 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 COX4I1P13073 169 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 DDI2Q5TDH0 399 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 LIPMQ5VYY2 423 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 RERGQ96A58 199 aaPredicted RBP10.2□□□□□ -0.78
CHD3-201ENST00000330494 BTN2A3PQ96KV6 586 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 BTBD9Q96Q07 612 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 MRPL57Q9BQC6 102 aaKnown RBP10.2□□□□□ -0.78
CHD3-201ENST00000330494 SLC28A3Q9HAS3 691 aa10.2□□□□□ -0.78
CHD3-201ENST00000330494 AJAP1Q9UKB5 411 aaPredicted RBP10.2□□□□□ -0.78
CHD3-201ENST00000330494 BMP10O95393 424 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 DGCR6Q14129 220 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 DLG2Q15700 870 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 SLC10A6Q3KNW5 377 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 PACS1Q6VY07 963 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 WDR36Q8NI36 951 aaKnown RBP10.19□□□□□ -0.78
CHD3-201ENST00000330494 SMG7Q92540 1137 aaKnown RBP10.19□□□□□ -0.78
CHD3-201ENST00000330494 SNX27Q96L92 541 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 ZNF142P52746 1687 aaPredicted RBP10.19□□□□□ -0.78
CHD3-201ENST00000330494 PCP4L1A6NKN8 68 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 FSCN2O14926 492 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 MPSTP25325 297 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 MAT2AP31153 395 aaKnown RBP10.19□□□□□ -0.78
CHD3-201ENST00000330494 KCNJ2P63252 427 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 MAPKAPK3Q16644 382 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 ACTRT2Q8TDY3 377 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 MIEF2Q96C03 454 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 H3BMM5 538 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 ULK1O75385 1050 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 RNASEH2AO75792 299 aaKnown RBP10.19□□□□□ -0.78
CHD3-201ENST00000330494 CCND3P30281 292 aaPredicted RBP10.19□□□□□ -0.78
CHD3-201ENST00000330494 PPM1AP35813 382 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 C1DQ13901 141 aaKnown RBP10.19□□□□□ -0.78
CHD3-201ENST00000330494 ANKRD22Q5VYY1 191 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 HGSNATQ68CP4 663 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 TMPRSS11BQ86T26 416 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 ZDHHC13Q8IUH4 622 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 CLYBLQ8N0X4 340 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 SLC25A23Q9BV35 468 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 OR2AG2A6NM03 316 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 LYPLA2O95372 231 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 EPHX1P07099 455 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 SLC35G4P0C7Q5 338 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 QPCTQ16769 361 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 BRMS1LQ5PSV4 323 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 OR14C36Q8NHC7 312 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 PHACTR1Q9C0D0 580 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 TRIM39Q9HCM9 518 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 EQTNQ9NQ60 294 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 RBPJLQ9UBG7 517 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 ARFGEF2Q9Y6D5 1785 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 MAGEC1O60732 1142 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 RASGRP1O95267 797 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 PRKCGP05129 697 aa10.19□□□□□ -0.78
CHD3-201ENST00000330494 TACR2P21452 398 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms