RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 CTBP1Q13363 440 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 TRIM68Q6AZZ1 485 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 SLC8B1Q6J4K2 584 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 LRRTM3Q86VH5 581 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 SPPL3Q8TCT6 385 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 FGF13Q92913 245 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 CFHR5Q9BXR6 569 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 ECT2Q9H8V3 914 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 L2HGDHQ9H9P8 463 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 ZNF831Q5JPB2 1677 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 DOCK2Q92608 1830 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 NEMP2A6NFY4 417 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 OR2AG2A6NM03 316 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 CHUKO15111 745 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 USP1O94782 785 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 PFKLP17858 780 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 NR6A1Q15406 480 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 MYLK3Q32MK0 819 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 ZC3H3Q8IXZ2 948 aaKnown RBP9.28□□□□□ -0.92
PTPRE-202ENST00000306042 PCYOX1LQ8NBM8 494 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 NUS1Q96E22 293 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 NDNQ99608 321 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 SLC38A3Q99624 504 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 INTS7Q9NVH2 962 aaKnown RBP9.28□□□□□ -0.92
PTPRE-202ENST00000306042 URADA6NGE7 173 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 SCAMP1O15126 338 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 STC2O76061 302 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 AP2A1O95782 977 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 LTA4HP09960 611 aaKnown RBP9.28□□□□□ -0.92
PTPRE-202ENST00000306042 CCDC166P0CW27 439 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 SESN3P58005 492 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 MGAT3Q09327 533 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 PON2Q15165 354 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 KBTBD12Q3ZCT8 623 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 CCDC153Q494R4 210 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 N4BP2L1Q5TBK1 243 aaPredicted RBP9.28□□□□□ -0.92
PTPRE-202ENST00000306042 ENPP7Q6UWV6 458 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 ADAMTSL2Q86TH1 951 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 PHC3Q8NDX5 983 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 C3orf58Q8NDZ4 430 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 METTL6Q8TCB7 284 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 TEKT5Q96M29 485 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 TEX12Q9BXU0 123 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 SLC2A11Q9BYW1 496 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 TMLHEQ9NVH6 421 aa9.28□□□□□ -0.92
PTPRE-202ENST00000306042 COL11A2P13942 1736 aaPredicted RBP9.28□□□□□ -0.92
PTPRE-202ENST00000306042 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.27□□□□□ -0.92
PTPRE-202ENST00000306042 TMEM114B3SHH9 223 aa9.27□□□□□ -0.92
PTPRE-202ENST00000306042 RIPK2O43353 540 aa9.27□□□□□ -0.92
PTPRE-202ENST00000306042 WDR93Q6P2C0 686 aa9.27□□□□□ -0.92
PTPRE-202ENST00000306042 KBTBD6Q86V97 674 aa9.27□□□□□ -0.92
PTPRE-202ENST00000306042 DEFB119Q8N690 84 aa9.27□□□□□ -0.92
PTPRE-202ENST00000306042 HIPK4Q8NE63 616 aa9.27□□□□□ -0.92
PTPRE-202ENST00000306042 SPDL1Q96EA4 605 aa9.27□□□□□ -0.92
PTPRE-202ENST00000306042 BORCS6Q96GS4 357 aa9.27□□□□□ -0.92
PTPRE-202ENST00000306042 STRA6Q9BX79 667 aa9.27□□□□□ -0.92
PTPRE-202ENST00000306042 RHBGQ9H310 441 aa9.27□□□□□ -0.92
PTPRE-202ENST00000306042 SLC2A4RGQ9NR83 387 aa9.27□□□□□ -0.92
PTPRE-202ENST00000306042 C6orf203Q9P0P8 240 aaPredicted RBP9.27□□□□□ -0.92
PTPRE-202ENST00000306042 IGSF9Q9P2J2 1179 aa9.27□□□□□ -0.92
PTPRE-202ENST00000306042 ARHGAP26Q9UNA1 814 aa9.27□□□□□ -0.92
PTPRE-202ENST00000306042 CYP8B1Q9UNU6 501 aa9.27□□□□□ -0.92
PTPRE-202ENST00000306042 REXO2Q9Y3B8 237 aaKnown RBP9.27□□□□□ -0.92
PTPRE-202ENST00000306042 PCDHB1Q9Y5F3 818 aa9.27□□□□□ -0.92
PTPRE-202ENST00000306042 A0A1B0GUL6 1792 aa9.27□□□□□ -0.92
PTPRE-202ENST00000306042 MYH9P35579 1960 aaKnown RBP9.27□□□□□ -0.92
PTPRE-202ENST00000306042 LCA5LO95447 670 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 CEBPBP17676 345 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 CDK7P50613 346 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 CCDC142Q17RM4 750 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 ESRP1Q6NXG1 681 aaKnown RBP9.27□□□□□ -0.93
PTPRE-202ENST00000306042 GPRIN1Q7Z2K8 1008 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 NXPE3Q969Y0 559 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 MRPL1Q9BYD6 325 aaKnown RBP9.27□□□□□ -0.93
PTPRE-202ENST00000306042 ALG9Q9H6U8 611 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 FAM47E-STBD1D6RA91 191 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 GUCY1B2O75343 617 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 GRK2P25098 689 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 PLK1P53350 603 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 SEMG2Q02383 582 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 RPL6Q02878 288 aaKnown RBP9.27□□□□□ -0.93
PTPRE-202ENST00000306042 CUL3Q13618 768 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 C9orf50Q5SZB4 431 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 RASIP1Q5U651 963 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 LRRC8BQ6P9F7 803 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 LRRC69Q6ZNQ3 347 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 SLC41A1Q8IVJ1 513 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 NRSN1Q8IZ57 195 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 BRSK1Q8TDC3 778 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 SETD7Q8WTS6 366 aaKnown RBP9.27□□□□□ -0.93
PTPRE-202ENST00000306042 PTCD2Q8WV60 388 aaKnown RBP9.27□□□□□ -0.93
PTPRE-202ENST00000306042 NKD2Q969F2 451 aaPredicted RBP9.27□□□□□ -0.93
PTPRE-202ENST00000306042 RTP3Q9BQQ7 232 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 ACE2Q9BYF1 805 aaPredicted RBP9.27□□□□□ -0.93
PTPRE-202ENST00000306042 PARVBQ9HBI1 364 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 SYPP08247 313 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 ACTR1BP42025 376 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 ACTR1AP61163 376 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 GUCY1A3Q02108 690 aa9.27□□□□□ -0.93
PTPRE-202ENST00000306042 SLC10A7Q0GE19 358 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms