RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.35□□□□□ -0.918e-7■■■■■ 33
CUX1-201ENST00000292535 RASSF5Q8WWW0 418 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 SEMA3CQ99985 751 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 HCN3Q9P1Z3 774 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 WNK1Q9H4A3 2382 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 PGM3O95394 542 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 ELFN1P0C7U0 828 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 FGFR3P22607 806 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 RPL38P63173 70 aaKnown RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 TMC3Q7Z5M5 1100 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 GPC2Q8N158 579 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 ASB8Q9H765 288 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 PSMD11O00231 422 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 ACAT1P24752 427 aaKnown RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 FAM91A1Q658Y4 838 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 OR10H5Q8NGA6 315 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 ARMCX1Q9P291 453 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 GPC6Q9Y625 555 aaPredicted RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 MYO3AQ8NEV4 1616 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 H3BM21 787 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 ALOX5P09917 674 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 S100A1P23297 94 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 ADSSP30520 456 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 MAMLD1Q13495 774 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 LY6KQ17RY6 165 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 RGS21Q2M5E4 152 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 CES3Q6UWW8 571 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 CLP1Q92989 425 aaKnown RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 ABI3Q9P2A4 366 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 SAMD4AQ9UPU9 718 aaKnown RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 WBP11Q9Y2W2 641 aaKnown RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 VAPBO95292 243 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 GLUD1P00367 558 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 IL1R1P14778 569 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 ITGA3P26006 1051 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 MRPS6P82932 125 aaKnown RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 SNX20Q7Z614 316 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 PSMA8Q8TAA3 256 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 ZNF75CPQ92670 426 aaPredicted RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 TM6SF2Q9BZW4 377 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 PRPF19Q9UMS4 504 aaKnown RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 PCDHGA3Q9Y5H0 932 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 PCSK2P16519 638 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 SLC26A3P40879 764 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 PPATQ06203 517 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 LARS2Q15031 903 aaKnown RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 ZNF730Q6ZMV8 503 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 TOP6BLQ8N6T0 577 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 KIAA0895Q8NCT3 520 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 FBXO30Q8TB52 745 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 AARSD1Q9BTE6 412 aaKnown RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 RTFDC1Q9BY42 306 aaPredicted RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 AASDHPPTQ9NRN7 309 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 NBASA2RRP1 2371 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.34□□□□□ -0.913e-7■■■■■ 26.8
CUX1-201ENST00000292535 ATG13O75143 517 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 CYP2R1Q6VVX0 501 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 EIF1ADQ8N9N8 165 aaKnown RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 PHPT1Q9NRX4 125 aaPredicted RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 APODP05090 189 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 LIPEQ05469 1076 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 HKDC1Q2TB90 917 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 B3GNT6Q6ZMB0 384 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 PIWIL4Q7Z3Z4 852 aaKnown RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 FBXO25Q8TCJ0 367 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 SEMA4AQ9H3S1 761 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 GMEB1Q9Y692 573 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 CCDC88AQ3V6T2 1871 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 RGL2O15211 777 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 SSTR1P30872 391 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 SMARCB1Q12824 385 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 POM121L1PQ3SYA9 428 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 METTL21AQ8WXB1 218 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 PLEKHA1Q9HB21 404 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 HMGXB4Q9UGU5 601 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 CYP17A1P05093 508 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 NUMBP49757 651 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 ATXN1P54253 815 aaKnown RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 ANTXR2P58335 489 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 PFKPQ01813 784 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 ARHGAP36Q6ZRI8 547 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 CKAP2Q8WWK9 683 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 SGCDQ92629 289 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 FAM129BQ96TA1 746 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 CLIC5Q9NZA1 410 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 OGDHLQ9ULD0 1010 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 RARRES1P49788 294 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 RAPSNQ13702 412 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 TTC7BQ86TV6 843 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 TMEM192Q8IY95 271 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 ETNPPLQ8TBG4 499 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 PIWIL2Q8TC59 973 aaKnown RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 L1RE1Q9UN81 338 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 TBC1D3DA0A087WVF3 549 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 TBC1D3IA0A087WXS9 549 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 TBC1D3EA0A087X179 549 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 TBC1D3KA0A087X1G2 549 aa9.34□□□□□ -0.91
CUX1-201ENST00000292535 TBC1D3FA6NER0 549 aaPredicted RBP9.34□□□□□ -0.91
CUX1-201ENST00000292535 TBC1D3LB9A6J9 549 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms