RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 CASP10Q92851 521 aa12.69□□□□□ -0.38
LIG1-201ENST00000263274 GPR78Q96P69 363 aa12.69□□□□□ -0.38
LIG1-201ENST00000263274 MRPL40Q9NQ50 206 aaKnown RBP12.69□□□□□ -0.38
LIG1-201ENST00000263274 FAM105AQ9NUU6 356 aa12.69□□□□□ -0.38
LIG1-201ENST00000263274 TMLHEQ9NVH6 421 aa12.69□□□□□ -0.38
LIG1-201ENST00000263274 UTP6Q9NYH9 597 aaKnown RBP12.69□□□□□ -0.38
LIG1-201ENST00000263274 CNOT6Q9ULM6 557 aaKnown RBP12.69□□□□□ -0.38
LIG1-201ENST00000263274 SUPT3HB4E1H0 165 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 MATN3O15232 486 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 MAGEB3O15480 346 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 NPHS1O60500 1241 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 NCK1P16333 377 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 IL10P22301 178 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 KCNC1P48547 511 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 RPL34P49207 117 aaKnown RBP12.68□□□□□ -0.38
LIG1-201ENST00000263274 ADARP55265 1226 aaKnown RBP12.68□□□□□ -0.38
LIG1-201ENST00000263274 SLC10A7Q0GE19 358 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 OTUD3Q5T2D3 398 aaPredicted RBP12.68□□□□□ -0.38
LIG1-201ENST00000263274 MARC1Q5VT66 337 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 PLEKHH3Q7Z736 793 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 CIR1Q86X95 450 aaPredicted RBP12.68□□□□□ -0.38
LIG1-201ENST00000263274 B3GALT6Q96L58 329 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 MRGPRX2Q96LB1 330 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 C3orf30Q96M34 536 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 FCRL5Q96RD9 977 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 SOX17Q9H6I2 414 aaPredicted RBP12.68□□□□□ -0.38
LIG1-201ENST00000263274 UBXN8O00124 270 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 MAFKO60675 156 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 MTHFD1P11586 935 aaKnown RBP12.68□□□□□ -0.38
LIG1-201ENST00000263274 HCAR3P49019 387 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 ARSDP51689 593 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 DENND5AQ6IQ26 1287 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 CALML6Q8TD86 181 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 TSPAN17Q96FV3 270 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 NSUN5Q96P11 429 aaKnown RBP12.68□□□□□ -0.38
LIG1-201ENST00000263274 SLC38A7Q9NVC3 462 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 UXTQ9UBK9 157 aaPredicted RBP12.68□□□□□ -0.38
LIG1-201ENST00000263274 RSL24D1Q9UHA3 163 aaKnown RBP12.68□□□□□ -0.38
LIG1-201ENST00000263274 ZNF510Q9Y2H8 683 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 TDRKHQ9Y2W6 561 aaKnown RBP12.68□□□□□ -0.38
LIG1-201ENST00000263274 RNF11Q9Y3C5 154 aa12.68□□□□□ -0.38
LIG1-201ENST00000263274 F8W810 466 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 HGFP14210 728 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 ZNF26P17031 533 aaPredicted RBP12.67□□□□□ -0.38
LIG1-201ENST00000263274 SLC5A2P31639 672 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 ARCN1P48444 511 aaKnown RBP12.67□□□□□ -0.38
LIG1-201ENST00000263274 AIF1P55008 147 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 EFEMP1Q12805 493 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 INTS6LQ5JSJ4 861 aaKnown RBP12.67□□□□□ -0.38
LIG1-201ENST00000263274 CHSY3Q70JA7 882 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 SH3RF2Q8TEC5 729 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 NCSTNQ92542 709 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 C19orf60Q96EN9 201 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 CCDC68Q9H2F9 335 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 AKTIPQ9H8T0 292 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 MARCH4Q9P2E8 410 aaPredicted RBP12.67□□□□□ -0.38
LIG1-201ENST00000263274 CDH9Q9ULB4 789 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 RAD54BQ9Y620 910 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 H3BMM5 538 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 SOCS2O14508 198 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 GNAO1P09471 354 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 ADSLP30566 484 aaPredicted RBP12.67□□□□□ -0.38
LIG1-201ENST00000263274 CRYBB1P53674 252 aaPredicted RBP12.67□□□□□ -0.38
LIG1-201ENST00000263274 SCAPQ12770 1279 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 GALNT3Q14435 633 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 C16orf72Q14CZ0 275 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 HERC3Q15034 1050 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 PLCL1Q15111 1095 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 CYP51A1Q16850 503 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 TECRLQ5HYJ1 363 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 CHST15Q7LFX5 561 aaPredicted RBP12.67□□□□□ -0.38
LIG1-201ENST00000263274 ARHGAP12Q8IWW6 846 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 C2CD4AQ8NCU7 369 aaPredicted RBP12.67□□□□□ -0.38
LIG1-201ENST00000263274 VPS33AQ96AX1 596 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 CCDC126Q96EE4 140 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 FAR2Q96K12 515 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 HBEGFQ99075 208 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 OSBPL11Q9BXB4 747 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 IGSF5Q9NSI5 407 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 ARL5CA6NH57 179 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 TARM1B6A8C7 271 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 GABRDO14764 452 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 GJB3O75712 270 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 H6PDO95479 791 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 PENKP01210 267 aaPredicted RBP12.67□□□□□ -0.38
LIG1-201ENST00000263274 TSPY1Q01534 308 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 PRKCQQ04759 706 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 FRG1Q14331 258 aaKnown RBP12.67□□□□□ -0.38
LIG1-201ENST00000263274 CCL14Q16627 93 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 ZIK1Q3SY52 487 aaPredicted RBP12.67□□□□□ -0.38
LIG1-201ENST00000263274 OVOS1Q6IE37 1185 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 VPS50Q96JG6 964 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 SPON2Q9BUD6 331 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 C1orf50Q9BV19 199 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 SENP6Q9GZR1 1112 aaPredicted RBP12.67□□□□□ -0.38
LIG1-201ENST00000263274 GPBP1L1Q9HC44 474 aaPredicted RBP12.67□□□□□ -0.38
LIG1-201ENST00000263274 NDUFAF1Q9Y375 327 aa12.67□□□□□ -0.38
LIG1-201ENST00000263274 TRIP12Q14669 1992 aaPredicted RBP12.66□□□□□ -0.38
LIG1-201ENST00000263274 E9PAM4 449 aa12.66□□□□□ -0.38
LIG1-201ENST00000263274 PIP5K1BO14986 540 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms