RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ATP2C1P98194 919 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PAN3Q58A45 887 aaKnown RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 TOR1AIP1Q5JTV8 583 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 CHSY3Q70JA7 882 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PLEKHM2Q8IWE5 1019 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 OR2L8Q8NGY9 312 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PADI2Q9Y2J8 665 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PIAS3Q9Y6X2 628 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 NEMP2A6NFY4 417 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PDE2AO00408 941 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 NACADO15069 1562 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 TAF5LO75529 589 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 AK1P00568 194 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PSMC3P17980 439 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 CDH11P55287 796 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PSME3P61289 254 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 DSG1Q02413 1049 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ACVR2BQ13705 512 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 DDX39BQ13838 428 aaKnown RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 EPHA7Q15375 998 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ATPAF1Q5TC12 328 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 CLEC10AQ8IUN9 316 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 C4orf33Q8N1A6 199 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 STOML3Q8TAV4 291 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 SLC16A10Q8TF71 515 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 NOTCH4Q99466 2003 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 FUT8Q9BYC5 575 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 NFKBIZQ9BYH8 718 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 FZD3Q9NPG1 666 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PXMP2Q9NR77 195 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 RASSF1Q9NS23 344 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ARL8BQ9NVJ2 186 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 OGDHLQ9ULD0 1010 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ANKRD6Q9Y2G4 727 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 MTO1Q9Y2Z2 717 aaKnown RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 TEX51A0A1B0GUA7 166 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 CALML3P27482 149 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 NAMPTP43490 491 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 SLC12A3P55017 1021 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 EIF3BP55884 814 aaKnown RBP3.59□□□□□ -1.84
SCN1A-221ENST00000641996 PMPCAQ10713 525 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 TMEM31Q5JXX7 168 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 TPGS1Q6ZTW0 290 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 DSELQ8IZU8 1212 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 SPATA6LQ8N4H0 392 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 NECAB1Q8N987 351 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 ADAM32Q8TC27 787 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 KBTBD7Q8WVZ9 684 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 DDX1Q92499 740 aaKnown RBP3.59□□□□□ -1.84
SCN1A-221ENST00000641996 CCT8L2Q96SF2 557 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF518BQ9C0D4 1074 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 RNF14Q9UBS8 474 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 POLLQ9UGP5 575 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 AP4B1Q9Y6B7 739 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 MIA3Q5JRA6 1907 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 INPP4BO15327 924 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 C9P02748 559 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 DHRS4L1P0CG22 281 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 PDGFRAP16234 1089 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 SLC26A3P40879 764 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 RPL10AP62906 217 aaKnown RBP3.59□□□□□ -1.84
SCN1A-221ENST00000641996 FAM189BP81408 668 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 PMS2P3Q13401 168 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 EML3Q32P44 896 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 RABEPKQ7Z6M1 372 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 COMMD7Q86VX2 200 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 DHFR2Q86XF0 187 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF677Q86XU0 584 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 FAM89AQ96GI7 184 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF570Q96NI8 536 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 KCNC2Q96PR1 638 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 METTL7AQ9H8H3 244 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 NT5MQ9NPB1 228 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF221Q9UK13 617 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 MTMR6Q9Y217 621 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 PCNX2A6NKB5 2137 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 A0A075B6Q4 140 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 NOL4O94818 638 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 CKMT1AP12532 417 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 FDFT1P37268 417 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 ALDH3B1P43353 468 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 POU3F4P49335 361 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 EIF6P56537 245 aaKnown RBP3.59□□□□□ -1.84
SCN1A-221ENST00000641996 GIT2Q14161 759 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 PCBP1Q15365 356 aaKnown RBP eCLIP3.59□□□□□ -1.84
SCN1A-221ENST00000641996 RABGAP1LQ5R372 815 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 LPCAT4Q643R3 524 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 TMEM270Q6UE05 265 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 DEF8Q6ZN54 512 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF589Q86UQ0 364 aaPredicted RBP3.59□□□□□ -1.84
SCN1A-221ENST00000641996 CLYBLQ8N0X4 340 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 FAM71DQ8N9W8 422 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 UBTD2Q8WUN7 234 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 CLPTM1LQ96KA5 538 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 TXN2Q99757 166 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 SLC6A17Q9H1V8 727 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 OBP2BQ9NPH6 170 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 MGAT4CQ9UBM8 478 aa3.59□□□□□ -1.84
SCN1A-221ENST00000641996 NOCTQ9UK39 431 aaKnown RBP3.59□□□□□ -1.84
SCN1A-221ENST00000641996 ICKQ9UPZ9 632 aa3.59□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms