RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 MEI1Q5TIA1 1274 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 CCDC181Q5TID7 509 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 KAZNQ674X7 775 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 CDKL3Q8IVW4 592 aaPredicted RBP18.38■□□□□ 0.53
CLN3-259ENST00000637551 MINDY1Q8N5J2 469 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 CNTD1Q8N815 330 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 HTR3CQ8WXA8 447 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 IMP4Q96G21 291 aaKnown RBP18.38■□□□□ 0.53
CLN3-259ENST00000637551 RAI2Q9Y5P3 530 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 PCNX2A6NKB5 2137 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 FRYQ5TBA9 3013 aa18.38■□□□□ 0.53
CLN3-259ENST00000637551 A0A0U1RQJ8 604 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 FPGTO14772 594 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 MAP3K6O95382 1288 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 EPOP01588 193 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 MSNP26038 577 aaKnown RBP18.37■□□□□ 0.53
CLN3-259ENST00000637551 PTPN3P26045 913 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 RXRGP48443 463 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 NXPH1P58417 271 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 MAXP61244 160 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 ADCY2Q08462 1091 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 TRAF2Q12933 501 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 ZBTB17Q13105 803 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 SEL1L2Q5TEA6 688 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 SEL1L3Q68CR1 1132 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 NPNTQ6UXI9 565 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 DBX2Q6ZNG2 339 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 ZSWIM9Q86XI8 627 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 ACTL9Q8TC94 416 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 CENPTQ96BT3 561 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 KLF6Q99612 283 aaPredicted RBP18.37■□□□□ 0.53
CLN3-259ENST00000637551 ADGRE3Q9BY15 652 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 ANGPTL2Q9UKU9 493 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 ZKSCAN5Q9Y2L8 839 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 PCDHB9Q9Y5E1 797 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 PCDHGC4Q9Y5F7 938 aa18.37■□□□□ 0.53
CLN3-259ENST00000637551 A0A1B0GVT2 93 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 IGLON5A6NGN9 336 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 GDF9O60383 454 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 STK10O94804 968 aaKnown RBP18.36■□□□□ 0.53
CLN3-259ENST00000637551 TEAD1P28347 426 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 MAT2AP31153 395 aaKnown RBP18.36■□□□□ 0.53
CLN3-259ENST00000637551 VIPR1P32241 457 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 ARRB1P49407 418 aaPredicted RBP18.36■□□□□ 0.53
CLN3-259ENST00000637551 CCT8P50990 548 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 BNC1Q01954 994 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 ITKQ08881 620 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 RALGDSQ12967 914 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 SUZ12Q15022 739 aaKnown RBP18.36■□□□□ 0.53
CLN3-259ENST00000637551 RPS6KA1Q15418 735 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 KIF19Q2TAC6 998 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 INAVAQ3KP66 663 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 PAF1Q8N7H5 531 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 PIH1D2Q8WWB5 315 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 TMEM131Q92545 1883 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 KLHDC7BQ96G42 594 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 NSMCE3Q96MG7 304 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 LZTFL1Q9NQ48 299 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 RXFP3Q9NSD7 469 aa18.36■□□□□ 0.53
CLN3-259ENST00000637551 PKD1L2Q7Z442 2459 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 COL5A1P20908 1838 aaPredicted RBP18.35■□□□□ 0.53
CLN3-259ENST00000637551 ANKRD11Q6UB99 2663 aaPredicted RBP18.35■□□□□ 0.53
CLN3-259ENST00000637551 A0A0J9YYE9 177 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 C4orf47A7E2U8 309 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 SLC31A1O15431 190 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 TRBC1P01850 177 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 PTMAP06454 111 aaKnown RBP18.35■□□□□ 0.53
CLN3-259ENST00000637551 ELFN1P0C7U0 828 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 C6P13671 934 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 PMLP29590 882 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 PFN3P60673 137 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 OTUD4Q01804 1114 aaKnown RBP18.35■□□□□ 0.53
CLN3-259ENST00000637551 DSC2Q02487 901 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 WASHC5Q12768 1159 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 FGL2Q14314 439 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 HLA-BQ31612 363 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 ITPRIPL1Q6GPH6 555 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 LIPIQ6XZB0 460 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 GCNT7Q6ZNI0 430 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 NLRP8Q86W28 1048 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 CBARPQ8N350 705 aaPredicted RBP18.35■□□□□ 0.53
CLN3-259ENST00000637551 MAIP1Q8WWC4 291 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 TBATAQ96M53 351 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 ELF4Q99607 663 aaPredicted RBP18.35■□□□□ 0.53
CLN3-259ENST00000637551 HEMGNQ9BXL5 484 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 GAREM1Q9H706 876 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 GLOD4Q9HC38 313 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 PCDH9Q9HC56 1237 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 SAE1Q9UBE0 346 aaPredicted RBP18.35■□□□□ 0.53
CLN3-259ENST00000637551 ITM2BQ9Y287 266 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 SLCO1B1Q9Y6L6 691 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 CEP295Q9C0D2 2601 aa18.35■□□□□ 0.53
CLN3-259ENST00000637551 A0A1B0GTQ1 180 aa18.34■□□□□ 0.53
CLN3-259ENST00000637551 CAPN8A6NHC0 703 aa18.34■□□□□ 0.53
CLN3-259ENST00000637551 FLRT2O43155 660 aa18.34■□□□□ 0.53
CLN3-259ENST00000637551 HEXIM1O94992 359 aaKnown RBP18.34■□□□□ 0.53
CLN3-259ENST00000637551 PAK4O96013 591 aaPredicted RBP18.34■□□□□ 0.53
CLN3-259ENST00000637551 WNT1P04628 370 aa18.34■□□□□ 0.53
CLN3-259ENST00000637551 PYGLP06737 847 aa18.34■□□□□ 0.53
CLN3-259ENST00000637551 MMP2P08253 660 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms