RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SLC13A1Q9BZW2 595 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 CEP44Q9C0F1 390 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 RHOJQ9H4E5 214 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 SUDS3Q9H7L9 328 aaPredicted RBP16.94■□□□□ 0.3
CLN3-252ENST00000636907 SNX15Q9NRS6 342 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 FBXO5Q9UKT4 447 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 ERVW-1Q9UQF0 538 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 MYO9BQ13459 2157 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 OR51F1A6NGY5 319 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 OTOL1A6NHN0 477 aaPredicted RBP16.93■□□□□ 0.3
CLN3-252ENST00000636907 HTRA2O43464 458 aaPredicted RBP16.93■□□□□ 0.3
CLN3-252ENST00000636907 RPP40O75818 363 aaKnown RBP16.93■□□□□ 0.3
CLN3-252ENST00000636907 NFATC1O95644 943 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 TOP3BO95985 862 aaKnown RBP16.93■□□□□ 0.3
CLN3-252ENST00000636907 GSRP00390 522 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 ABL2P42684 1182 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 DGKGP49619 791 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 SERPINB8P50452 374 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 DLX2Q07687 328 aaPredicted RBP16.93■□□□□ 0.3
CLN3-252ENST00000636907 PDE1CQ14123 709 aaPredicted RBP16.93■□□□□ 0.3
CLN3-252ENST00000636907 GRM3Q14832 879 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 DLG2Q15700 870 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 ATAT1Q5SQI0 421 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 CMC1Q7Z7K0 106 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 PCDH20Q8N6Y1 951 aaKnown RBP16.93■□□□□ 0.3
CLN3-252ENST00000636907 CALML6Q8TD86 181 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 CHMP6Q96FZ7 201 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 MAGEB18Q96M61 343 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 FAM111AQ96PZ2 611 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 MYADMQ96S97 322 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 CCT8L2Q96SF2 557 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 FAM83CQ9BQN1 747 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 IQCGQ9H095 443 aaKnown RBP16.93■□□□□ 0.3
CLN3-252ENST00000636907 S1PR5Q9H228 398 aa16.93■□□□□ 0.3
CLN3-252ENST00000636907 NLE1Q9NVX2 485 aaPredicted RBP16.93■□□□□ 0.3
CLN3-252ENST00000636907 HECAQ9UBI9 543 aaPredicted RBP16.93■□□□□ 0.3
CLN3-252ENST00000636907 CCDC162PA2VCL2 907 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 BNIP3LO60238 219 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 SOCS5O75159 536 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 TBX10O75333 385 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 TULP3O75386 442 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 TYK2P29597 1187 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 FOXN2P32314 431 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 CRHR1P34998 444 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 ETV4P43268 484 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 GRIA4P48058 902 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 EPHB1P54762 984 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 GAB4Q2WGN9 574 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 MYLK3Q32MK0 819 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 CARD16Q5EG05 197 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 PPM1JQ5JR12 505 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 VITQ6UXI7 678 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 CHRDL2Q6WN34 429 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 KIAA0408Q6ZU52 694 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 OTUD6BQ8N6M0 293 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 CYB5D2Q8WUJ1 264 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 SORCS1Q8WY21 1168 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 MRGPRX3Q96LB0 322 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 GPR22Q99680 433 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 FAM107BQ9H098 131 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 ATP13A3Q9H7F0 1226 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 CAB39LQ9H9S4 337 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 ZFP14Q9HCL3 533 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 FBXO6Q9NRD1 293 aaPredicted RBP16.92■□□□□ 0.3
CLN3-252ENST00000636907 PLLPQ9Y342 182 aa16.92■□□□□ 0.3
CLN3-252ENST00000636907 KIF26AQ9ULI4 1882 aaPredicted RBP16.92■□□□□ 0.3
CLN3-252ENST00000636907 C2orf81A6NN90 581 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 HAUS5O94927 633 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 GOT2P00505 430 aaKnown RBP16.91■□□□□ 0.3
CLN3-252ENST00000636907 SLC4A1P02730 911 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 CTPS1P17812 591 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 CD151P48509 253 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 CCT5P48643 541 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 ZNF789Q5FWF6 425 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 CES5AQ6NT32 575 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 Q6ZVU0 165 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 ZNF771Q7L3S4 317 aaPredicted RBP16.91■□□□□ 0.3
CLN3-252ENST00000636907 ETFBKMTQ8IXQ9 262 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 LRRC34Q8IZ02 419 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 TTC30BQ8N4P2 665 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 PNPLA1Q8N8W4 532 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 OR4K2Q8NGD2 314 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 GABPB2Q8TAK5 448 aaPredicted RBP16.91■□□□□ 0.3
CLN3-252ENST00000636907 SPOCK2Q92563 424 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 CDKN2AIPNLQ96HQ2 116 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 PRO3102Q9H379 93 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 ECT2Q9H8V3 914 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 HPS4Q9NQG7 708 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 POLR3BQ9NW08 1133 aaPredicted RBP16.91■□□□□ 0.3
CLN3-252ENST00000636907 THG1LQ9NWX6 298 aaKnown RBP16.91■□□□□ 0.3
CLN3-252ENST00000636907 MARCH4Q9P2E8 410 aaPredicted RBP16.91■□□□□ 0.3
CLN3-252ENST00000636907 REV3LO60673 3130 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 PRRC2BQ5JSZ5 2229 aaKnown RBP16.91■□□□□ 0.3
CLN3-252ENST00000636907 BPTFQ12830 3046 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 A0A0U1RQS6 177 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 TCP11X1B4DZS4 312 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 NDUFAB1O14561 156 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 FAM107AO95990 144 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 ALPIP09923 528 aa16.91■□□□□ 0.3
CLN3-252ENST00000636907 DHRS4L1P0CG22 281 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms