RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 INO80EQ8NBZ0 244 aaPredicted RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 SLC37A3Q8NCC5 494 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 GTF2H4Q92759 462 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ROGDIQ9GZN7 287 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 BRD7Q9NPI1 651 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 MAT2BQ9NZL9 334 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ZNF225Q9UK10 706 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 A0A0X1KG70 313 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 UBAP1LF5GYI3 381 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 LRIG2O94898 1065 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 TDP2O95551 362 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 MBP02144 154 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 RPLP0P05388 317 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 NR4A2P43354 598 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ATP12AP54707 1039 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CDH13P55290 713 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 GRSF1Q12849 480 aaKnown RBP eCLIP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 USP10Q14694 798 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 GRTP1Q5TC63 336 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 SLFN12LQ6IEE8 588 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CCBE1Q6UXH8 406 aaPredicted RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 SMIM15Q7Z3B0 74 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 TERB2Q8NHR7 220 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 SH2D3AQ9BRG2 576 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ZNF577Q9BSK1 485 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 MORF4L1Q9UBU8 362 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 DUSP12Q9UNI6 340 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 PHLPP1O60346 1717 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 H0YAE9 185 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CTDNEP1O95476 244 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 HK3P52790 923 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 FAM198BQ6UWH4 519 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 HPS6Q86YV9 775 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ZC3H7AQ8IWR0 971 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 KCNN1Q92952 543 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 KCTD15Q96SI1 283 aaPredicted RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 FUNDC2Q9BWH2 189 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 MROQ9BYG7 248 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 KCNN2Q9H2S1 579 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 USP29Q9HBJ7 922 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CPQQ9Y646 472 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 FABP12A6NFH5 140 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CDC7O00311 574 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 NR5A2O00482 541 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 RFPL1O75677 317 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 VAPBO95292 243 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ANGPTL1O95841 491 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 EIF2DP41214 584 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 VEGFCP49767 419 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 DYNLL1P63167 89 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CCDC117Q8IWD4 279 aaPredicted RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 C10orf90Q96M02 699 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 S100A13Q99584 98 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 SEPHS2Q99611 448 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 SIK2Q9H0K1 926 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 LIN28AQ9H9Z2 209 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 SLC39A10Q9ULF5 831 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 PPP2R3BQ9Y5P8 575 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CICQ96RK0 1608 aaPredicted RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 HMX3A6NHT5 357 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 C9IYK1 514 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 DDX6P26196 483 aaKnown RBP eCLIP4.97□□□□□ -1.611e-8■□□□□ 11.1
VPS13D-213ENST00000613099 EIF2S3P41091 472 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ERVK-21P61565 698 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 FADDQ13158 208 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CERKLQ49MI3 558 aaPredicted RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 PNCKQ6P2M8 343 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CHERPQ8IWX8 916 aaKnown RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ZBTB38Q8NAP3 1195 aaPredicted RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ASIC4Q96FT7 647 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CIB1Q99828 191 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 AIF1LQ9BQI0 150 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 DLGAP4Q9Y2H0 992 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 GMPPBQ9Y5P6 360 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 UPK1BO75841 260 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CCNYL3P0C7X3 344 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ARF4P18085 180 aaPredicted RBP4.97□□□□□ -1.61
VPS13D-213ENST00000613099 GABRB2P47870 512 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 RBBP7Q16576 425 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 SFT2D3Q587I9 215 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 HIPK1Q86Z02 1210 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 NLGN1Q8N2Q7 840 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 CADM2Q8N3J6 435 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 MEIOBQ8N635 442 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 ACTR6Q9GZN1 396 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 MALT1Q9UDY8 824 aa4.97□□□□□ -1.61
VPS13D-213ENST00000613099 MIA3Q5JRA6 1907 aa4.96□□□□□ -1.61
VPS13D-213ENST00000613099 BBIP1A8MTZ0 92 aa4.96□□□□□ -1.61
VPS13D-213ENST00000613099 OR6B1O95007 311 aa4.96□□□□□ -1.61
VPS13D-213ENST00000613099 APOC3P02656 99 aa4.96□□□□□ -1.61
VPS13D-213ENST00000613099 PGK2P07205 417 aa4.96□□□□□ -1.61
VPS13D-213ENST00000613099 OGNP20774 298 aaKnown RBP4.96□□□□□ -1.61
VPS13D-213ENST00000613099 FAUP35544 74 aaKnown RBP4.96□□□□□ -1.61
VPS13D-213ENST00000613099 BMXP51813 675 aa4.96□□□□□ -1.61
VPS13D-213ENST00000613099 CDC42P60953 191 aa4.96□□□□□ -1.61
VPS13D-213ENST00000613099 ZNF33BQ06732 778 aa4.96□□□□□ -1.61
VPS13D-213ENST00000613099 KLHL26Q53HC5 615 aa4.96□□□□□ -1.61
VPS13D-213ENST00000613099 ISLR2Q6UXK2 745 aa4.96□□□□□ -1.61
VPS13D-213ENST00000613099 C14orf80Q86SX3 495 aa4.96□□□□□ -1.61
VPS13D-213ENST00000613099 C3orf49Q96BT1 292 aa4.96□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms