RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 PORP16435 677 aaPredicted RBP18.43■□□□□ 0.54
UPF1-210ENST00000600689 STX1BP61266 288 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 PPP4R4Q6NUP7 873 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 DCDC5Q6ZRR9 648 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 DDIASQ8IXT1 998 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 PDZD8Q8NEN9 1154 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 HM13Q8TCT9 377 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 RNF34Q969K3 372 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 EIF2AQ9BY44 585 aaKnown RBP18.43■□□□□ 0.54
UPF1-210ENST00000600689 VPS45Q9NRW7 570 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 GJD2Q9UKL4 321 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 CNOT11Q9UKZ1 510 aaKnown RBP18.43■□□□□ 0.54
UPF1-210ENST00000600689 DLGAP1O14490 977 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 ADAM23O75077 832 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 BDNFP23560 247 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 IGFBP6P24592 240 aaPredicted RBP18.43■□□□□ 0.54
UPF1-210ENST00000600689 EIF2B2P49770 351 aaKnown RBP18.43■□□□□ 0.54
UPF1-210ENST00000600689 MAP3K7CLP57077 242 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 PIGFQ07326 219 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 OTUD1Q5VV17 481 aaPredicted RBP18.43■□□□□ 0.54
UPF1-210ENST00000600689 ERMP1Q7Z2K6 904 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 PPTC7Q8NI37 304 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 ABHD8Q96I13 439 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 ADNPQ9H2P0 1102 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 DDIT4Q9NX09 232 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 SPTLC1O15269 473 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 MAN1A2O60476 641 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 PFKPQ01813 784 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 SQLEQ14534 574 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 MARCH8Q5T0T0 291 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 CAMK1DQ8IU85 385 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 NFKBIZQ9BYH8 718 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 KATNBL1Q9H079 304 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 ALG9Q9H6U8 611 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 PCDH12Q9NPG4 1184 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 WARS2Q9UGM6 360 aaKnown RBP18.42■□□□□ 0.54
UPF1-210ENST00000600689 EVLQ9UI08 416 aaPredicted RBP18.42■□□□□ 0.54
UPF1-210ENST00000600689 BTRCQ9Y297 605 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 TOR1BO14657 336 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 TSPAN1O60635 241 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 PCNAP12004 261 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 IL10P22301 178 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 BORCS5Q969J3 196 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 GPR78Q96P69 363 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 VRTNQ9H8Y1 702 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 LTB4R2Q9NPC1 389 aa18.42■□□□□ 0.54
UPF1-210ENST00000600689 TARM1B6A8C7 271 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 SMPD1P17405 629 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 MATN1P21941 496 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 HALP42357 657 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 TUBA4AP68366 448 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 CDH17Q12864 832 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 RPS6KA2Q15349 733 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 RABL3Q5HYI8 236 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 SCIMPQ6UWF3 145 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 STRADAQ7RTN6 431 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 ZC3H15Q8WU90 426 aaKnown RBP18.41■□□□□ 0.54
UPF1-210ENST00000600689 HDAC10Q969S8 669 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 FANCEQ9HB96 536 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 ZNF638Q14966 1978 aaKnown RBP18.41■□□□□ 0.54
UPF1-210ENST00000600689 A0A0J9YYE9 177 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 TMEM221A6NGB7 291 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 A8MT66 165 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 CBFA2T3O75081 653 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 FASP25445 335 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 POLR2IP36954 125 aaKnown RBP18.41■□□□□ 0.54
UPF1-210ENST00000600689 TNK2Q07912 1038 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 BTLAQ7Z6A9 289 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 PELI3Q8N2H9 469 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 TANKQ92844 425 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 HDAC11Q96DB2 347 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 MS4A4AQ96JQ5 239 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 KCNA7Q96RP8 456 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 SLC25A23Q9BV35 468 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 GBA3Q9H227 469 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 UTP6Q9NYH9 597 aaKnown RBP18.41■□□□□ 0.54
UPF1-210ENST00000600689 IPO11Q9UI26 975 aaKnown RBP18.41■□□□□ 0.54
UPF1-210ENST00000600689 ANKRD6Q9Y2G4 727 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 TRIM17Q9Y577 477 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 MAGED1Q9Y5V3 778 aaPredicted RBP18.41■□□□□ 0.54
UPF1-210ENST00000600689 H3BMM5 538 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 DCLK1O15075 740 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 HUS1O60921 280 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 PSMA4P25789 261 aaKnown RBP18.41■□□□□ 0.54
UPF1-210ENST00000600689 MAPRE2Q15555 327 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 DPP9Q86TI2 863 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 FUNDC1Q8IVP5 155 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 RDH11Q8TC12 318 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 VPS33AQ96AX1 596 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 PPP1R10Q96QC0 940 aaKnown RBP18.41■□□□□ 0.54
UPF1-210ENST00000600689 OLFM1Q99784 485 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.41■□□□□ 0.54
UPF1-210ENST00000600689 CD300AQ9UGN4 299 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 TRAF6Q9Y4K3 522 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 TIMM13Q9Y5L4 95 aaPredicted RBP18.41■□□□□ 0.54
UPF1-210ENST00000600689 ST14Q9Y5Y6 855 aa18.41■□□□□ 0.54
UPF1-210ENST00000600689 PLXNB2O15031 1838 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 CCL15-CCL14A0A0B4J2E2 113 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 TOMM70O94826 608 aa18.4■□□□□ 0.54
UPF1-210ENST00000600689 SIX3O95343 332 aaPredicted RBP18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms