RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 TRABDQ9H4I3 376 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 MAGEE1Q9HCI5 957 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 CHKBQ9Y259 395 aa16.64■□□□□ 0.25
SHKBP1-219ENST00000599575 CAPN8A6NHC0 703 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 SPINT1O43278 529 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 PMPCBO75439 489 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 FGF1P05230 155 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 PDHA1P08559 390 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 PSMB4P28070 264 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 VIPR1P32241 457 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 PTGER3P43115 390 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 FAM193AP78312 1265 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 CREB5Q02930 508 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 OVGP1Q12889 678 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 ZNF284Q2VY69 593 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 RANBP10Q6VN20 620 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 SYDE1Q6ZW31 735 aaPredicted RBP16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 LINC00523Q86TU6 105 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 SKA1Q96BD8 255 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 RMDN1Q96DB5 314 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 MRGPRX2Q96LB1 330 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 SLC17A9Q9BYT1 436 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 LRRC40Q9H9A6 602 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 ARNT2Q9HBZ2 717 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 HACD3Q9P035 362 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 PCYOX1Q9UHG3 505 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 PILRBQ9UKJ0 227 aa16.63■□□□□ 0.25
SHKBP1-219ENST00000599575 RGSL1A5PLK6 1076 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 PRAMEF26H0Y7S4 382 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 AP3B1O00203 1094 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 TOR1BO14657 336 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 TM7SF2O76062 418 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 ELFN1P0C7U0 828 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 RACK1P63244 317 aaKnown RBP16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 CDK16Q00536 496 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 SEMA5AQ13591 1074 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 ARHGEF7Q14155 803 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 NAPEPLDQ6IQ20 393 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 IQCHQ86VS3 1027 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 RGL4Q8IZJ4 473 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 GPR161Q8N6U8 529 aaKnown RBP16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 LPCAT1Q8NF37 534 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 KIF18AQ8NI77 898 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 RUBCNQ92622 972 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 CAPZA3Q96KX2 299 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 C19orf43Q9BQ61 176 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 CDH19Q9H159 772 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 FAM86C1Q9NVL1 165 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 B4GALT6Q9UBX8 382 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 CDC23Q9UJX2 597 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 VPS13AQ96RL7 3174 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 SHROOM3Q8TF72 1996 aa16.62■□□□□ 0.25
SHKBP1-219ENST00000599575 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 A0A1B0GTW7 788 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 MAGEC1O60732 1142 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 HEXIM1O94992 359 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 METTL18O95568 372 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 ECEL1O95672 775 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 AP2A1O95782 977 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 HNRNPA2B1P22626 353 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 AKT2P31751 481 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 ADRA1AP35348 466 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 HNF1BP35680 557 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 KCNJ1P48048 391 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 LIG3P49916 1009 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 AFF3P51826 1226 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 PPP2CBP62714 309 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 PPP2CAP67775 309 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 CKAP4Q07065 602 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 SLC1A5Q15758 541 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 PCSK7Q16549 785 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 QPCTQ16769 361 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 KCTD11Q693B1 232 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 LIPIQ6XZB0 460 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 ZNF572Q7Z3I7 529 aaPredicted RBP16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 NLRP8Q86W28 1048 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 CBARPQ8N350 705 aaPredicted RBP16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 IPMKQ8NFU5 416 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 C1orf216Q8TAB5 229 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 EIF2B3Q9NR50 452 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 RAD18Q9NS91 495 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 UBP1Q9NZI7 540 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 ZFR2Q9UPR6 939 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 HS3ST3A1Q9Y663 406 aa16.61■□□□□ 0.25
SHKBP1-219ENST00000599575 PRR23AA6NEV1 266 aa16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 IGLON5A6NGN9 336 aa16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 E7EVH7 732 aa16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 BCAT2O15382 392 aaPredicted RBP16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 SUN1O94901 812 aa16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 ITPKAP23677 461 aa16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 RPL22P35268 128 aaKnown RBP16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 RALGDSQ12967 914 aa16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 DHX34Q14147 1143 aaKnown RBP16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 TEAD4Q15561 434 aa16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 WHAMMP3Q1A5X7 153 aa16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 DUOXA1Q1HG43 343 aa16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 TTC27Q6P3X3 843 aa16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 GORASP1Q9BQQ3 440 aa16.6■□□□□ 0.25
SHKBP1-219ENST00000599575 ORAI3Q9BRQ5 295 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms