RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 CNGA4Q8IV77 575 aa12.21□□□□□ -0.45
LIG1-217ENST00000599165 ARRDC2Q8TBH0 407 aa12.21□□□□□ -0.45
LIG1-217ENST00000599165 FATE1Q969F0 183 aa12.21□□□□□ -0.45
LIG1-217ENST00000599165 CCDC42Q96M95 316 aa12.21□□□□□ -0.45
LIG1-217ENST00000599165 TSGA13Q96PP4 275 aa12.21□□□□□ -0.45
LIG1-217ENST00000599165 RNF157Q96PX1 679 aa12.21□□□□□ -0.45
LIG1-217ENST00000599165 LRRC61Q9BV99 259 aa12.21□□□□□ -0.45
LIG1-217ENST00000599165 CLPBQ9H078 707 aa12.21□□□□□ -0.45
LIG1-217ENST00000599165 GOLPH3Q9H4A6 298 aa12.21□□□□□ -0.45
LIG1-217ENST00000599165 ZNHIT6Q9NWK9 470 aaKnown RBP12.21□□□□□ -0.45
LIG1-217ENST00000599165 NLGN3Q9NZ94 848 aa12.21□□□□□ -0.45
LIG1-217ENST00000599165 DTLQ9NZJ0 730 aa12.21□□□□□ -0.45
LIG1-217ENST00000599165 LAMA5O15230 3695 aa12.21□□□□□ -0.46
LIG1-217ENST00000599165 KIF26BQ2KJY2 2108 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.2□□□□□ -0.46
LIG1-217ENST00000599165 TMEM8BA6NDV4 472 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 CASC3O15234 703 aaKnown RBP12.2□□□□□ -0.46
LIG1-217ENST00000599165 RECQL5O94762 991 aaPredicted RBP12.2□□□□□ -0.46
LIG1-217ENST00000599165 PGLSO95336 258 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 PRLP01236 227 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 PDHA1P08559 390 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 KRT7P08729 469 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 JUNDP17535 347 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 FECHP22830 423 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 XPAP23025 273 aaPredicted RBP12.2□□□□□ -0.46
LIG1-217ENST00000599165 ZNF75DP51815 510 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 HNRNPKP61978 463 aaKnown RBP eCLIP12.2□□□□□ -0.46
LIG1-217ENST00000599165 INSM1Q01101 510 aaPredicted RBP12.2□□□□□ -0.46
LIG1-217ENST00000599165 DSC2Q02487 901 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 NIPAL4Q0D2K0 466 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 INPP5AQ14642 412 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 LRRC14Q15048 493 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 CNGA3Q16281 694 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 ALG11Q2TAA5 492 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 MARC1Q5VT66 337 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 SLC9A4Q6AI14 798 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 ERAP2Q6P179 960 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 LRRC49Q8IUZ0 686 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 PHACTR4Q8IZ21 702 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 FAM181AQ8N9Y4 354 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 KCTD6Q8NC69 237 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 PIH1D2Q8WWB5 315 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 ZCCHC14Q8WYQ9 949 aaKnown RBP12.2□□□□□ -0.46
LIG1-217ENST00000599165 APOLD1Q96LR9 279 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 COQ10AQ96MF6 247 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 MCCC1Q96RQ3 725 aaPredicted RBP12.2□□□□□ -0.46
LIG1-217ENST00000599165 TRIM5Q9C035 493 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 NT5MQ9NPB1 228 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 SCUBE2Q9NQ36 999 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 SALL4Q9UJQ4 1053 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 INTUQ9ULD6 942 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 OR1A2Q9Y585 309 aa12.2□□□□□ -0.46
LIG1-217ENST00000599165 NPIPB15A6NHN6 443 aaPredicted RBP12.19□□□□□ -0.46
LIG1-217ENST00000599165 SRRM3A6NNA2 597 aaPredicted RBP12.19□□□□□ -0.46
LIG1-217ENST00000599165 ZNF487B1APH4 448 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 TOR1BO14657 336 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 MATN3O15232 486 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 AQP9O43315 295 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 HEXIM1O94992 359 aaKnown RBP12.19□□□□□ -0.46
LIG1-217ENST00000599165 PCCBP05166 539 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 HLA-DQB2P05538 268 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 MMP2P08253 660 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 C1SP09871 688 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 CKMT1AP12532 417 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 ARHGAP25P42331 645 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 HADHBP55084 474 aaKnown RBP12.19□□□□□ -0.46
LIG1-217ENST00000599165 ZBTB17Q13105 803 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 C1orf61Q13536 156 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 NFATC4Q14934 902 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 TAZQ16635 292 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 DEFB133Q30KQ1 61 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 RALGPS1Q5JS13 557 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 CFAP58Q5T655 872 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 HES3Q5TGS1 186 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 RFLNAQ6ZTI6 216 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 HSD11B1LQ7Z5J1 315 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 TSPAN33Q86UF1 283 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 TMPRSS12Q86WS5 348 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 PROSER1Q86XN7 944 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 RHOT2Q8IXI1 618 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 CNTD1Q8N815 330 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 MDM1Q8TC05 714 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 LMX1AQ8TE12 382 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 HDAC11Q96DB2 347 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 PDXPQ96GD0 296 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 TBATAQ96M53 351 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 OLFM3Q96PB7 478 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 LGMNQ99538 433 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 SEMA3CQ99985 751 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 APOOQ9BUR5 198 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 LGR4Q9BXB1 951 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 APOBEC3BQ9UH17 382 aaKnown RBP12.19□□□□□ -0.46
LIG1-217ENST00000599165 LCMT1Q9UIC8 334 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 REXO2Q9Y3B8 237 aaKnown RBP12.19□□□□□ -0.46
LIG1-217ENST00000599165 PPIL1Q9Y3C6 166 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 CSNK1G3Q9Y6M4 447 aa12.19□□□□□ -0.46
LIG1-217ENST00000599165 URB1O60287 2271 aaKnown RBP12.19□□□□□ -0.46
LIG1-217ENST00000599165 LRRD1A4D1F6 860 aa12.18□□□□□ -0.46
LIG1-217ENST00000599165 RCCD1A6NED2 376 aa12.18□□□□□ -0.46
LIG1-217ENST00000599165 TRABD2BA6NFA1 517 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms