RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 VPS28Q9UK41 221 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 RUVBL2Q9Y230 463 aaKnown RBP17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 LZTS1Q9Y250 596 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 PCDHGC4Q9Y5F7 938 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 DOCK6Q96HP0 2047 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 EPOPA6NHQ4 379 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 GRM6O15303 877 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 UNC5CO95185 931 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 MYL4P12829 197 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 TARSP26639 723 aaKnown RBP17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 CCR2P41597 374 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 POLD2P49005 469 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 KCNJ2P63252 427 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 SLC7A9P82251 487 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 UBE3AQ05086 875 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 CTC1Q2NKJ3 1217 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 PLPP4Q5VZY2 271 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 KIF2BQ8N4N8 673 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 SKA1Q96BD8 255 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 GPR78Q96P69 363 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 NUDCD1Q96RS6 583 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 OLFM1Q99784 485 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 UNKQ9C0B0 810 aaKnown RBP17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 KCNK4Q9NYG8 393 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 VPS51Q9UID3 782 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 CLEC4EQ9ULY5 219 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 DNAJC16Q9Y2G8 782 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 ACOT9Q9Y305 439 aa17.12■□□□□ 0.33
SHKBP1-216ENST00000598201 DENND4CQ5VZ89 1909 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 RFXAPO00287 272 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 S1PR4O95977 384 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 GOT2P00505 430 aaKnown RBP17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 CDH18Q13634 790 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 ZNF697Q5TEC3 545 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 HTR3DQ70Z44 454 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 ASRGL1Q7L266 308 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 TBC1D1Q86TI0 1168 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 NXNL1Q96CM4 212 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 SLC46A2Q9BY10 475 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 PLK2Q9NYY3 685 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 LHX3Q9UBR4 397 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 CCDC162PA2VCL2 907 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 RASSF9O75901 435 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 CBX6O95503 412 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 MT-CO1P00395 513 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 GRK2P25098 689 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 CRABP2P29373 138 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 AQP5P55064 265 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 POU4F1Q01851 419 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 TTC7BQ86TV6 843 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 ALYREFQ86V81 257 aaKnown RBP17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 PACS2Q86VP3 889 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 APCDD1Q8J025 514 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 FSTL5Q8N475 847 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 TDRD5Q8NAT2 981 aaKnown RBP17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 GDPD5Q8WTR4 605 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 RMDN1Q96DB5 314 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 MOCOSQ96EN8 888 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 DNMT3BQ9UBC3 853 aaKnown RBP17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 HAO1Q9UJM8 370 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 LSM7Q9UK45 103 aaKnown RBP17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 FCF1Q9Y324 198 aaKnown RBP17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 RAI2Q9Y5P3 530 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 IRAK3Q9Y616 596 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 SZT2Q5T011 3432 aa17.11■□□□□ 0.33
SHKBP1-216ENST00000598201 TRAV19A0A0A6YYK7 116 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 TYW5A2RUC4 315 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 TARM1B6A8C7 271 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 K7ERQ8 282 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 GLUD1P00367 558 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 COL6A2P12110 1019 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 SKIV2L2P42285 1042 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 ABCE1P61221 599 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 TRAF2Q12933 501 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 SEMA3AQ14563 771 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 PTPRRQ15256 657 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 CCDC91Q7Z6B0 441 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 MFN1Q8IWA4 741 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 MRPL43Q8N983 215 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 MDGA1Q8NFP4 955 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 DDI1Q8WTU0 396 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 KLHL29Q96CT2 875 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 SCYL1Q96KG9 808 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 ACSS2Q9NR19 701 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 TLR9Q9NR96 1032 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 SH3BP1Q9Y3L3 701 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 MYO9BQ13459 2157 aa17.1■□□□□ 0.33
SHKBP1-216ENST00000598201 RPP40O75818 363 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-216ENST00000598201 CDC25CP30307 473 aa17.09■□□□□ 0.33
SHKBP1-216ENST00000598201 CLCN5P51795 746 aa17.09■□□□□ 0.33
SHKBP1-216ENST00000598201 ZNF140P52738 457 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-216ENST00000598201 CAMK1Q14012 370 aa17.09■□□□□ 0.33
SHKBP1-216ENST00000598201 GRIN2CQ14957 1233 aa17.09■□□□□ 0.33
SHKBP1-216ENST00000598201 LRRC8EQ6NSJ5 796 aa17.09■□□□□ 0.33
SHKBP1-216ENST00000598201 ZYG11AQ6WRX3 759 aa17.09■□□□□ 0.33
SHKBP1-216ENST00000598201 TPGS1Q6ZTW0 290 aa17.09■□□□□ 0.33
SHKBP1-216ENST00000598201 GALNT7Q86SF2 657 aa17.09■□□□□ 0.33
SHKBP1-216ENST00000598201 ELMOD1Q8N336 334 aa17.09■□□□□ 0.33
SHKBP1-216ENST00000598201 LPCAT1Q8NF37 534 aa17.09■□□□□ 0.33
SHKBP1-216ENST00000598201 PIWIL2Q8TC59 973 aaKnown RBP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms