RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 UMODL1-AS1Q8N2C9 162 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 GPR156Q8NFN8 814 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 TMEM159Q96B96 161 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 HMCESQ96FZ2 354 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 ZNF641Q96N77 438 aaPredicted RBP12.61□□□□□ -0.39
TRIM28-212ENST00000597995 MCEEQ96PE7 176 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 RBM15Q96T37 977 aaKnown RBP eCLIP12.61□□□□□ -0.39
TRIM28-212ENST00000597995 KLC2Q9H0B6 622 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 SUV39H2Q9H5I1 410 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 CATSPERBQ9H7T0 1116 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 EPB41L5Q9HCM4 733 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 AIPL1Q9NZN9 384 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 SIRPGQ9P1W8 387 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 LHX3Q9UBR4 397 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 KLQ9UEF7 1012 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 APPL1Q9UKG1 709 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 DGKBQ9Y6T7 804 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 TMCO5BA8MYB1 307 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 RASA4BC9J798 803 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 DDX3XO00571 662 aaKnown RBP eCLIP12.6□□□□□ -0.39
TRIM28-212ENST00000597995 INSIG1O15503 277 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 RASA4O43374 803 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 SLC28A2O43868 658 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 NOBOXO60393 691 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 WISP1O95388 367 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 ITGB2P05107 769 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 RPLP0P05388 317 aaKnown RBP12.6□□□□□ -0.39
TRIM28-212ENST00000597995 PNLIPP16233 465 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 GLB1P16278 677 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 TNFAIP3P21580 790 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 PBX1P40424 430 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 ZNF143P52747 638 aaPredicted RBP12.6□□□□□ -0.39
TRIM28-212ENST00000597995 ZFP36L1Q07352 338 aaKnown RBP12.6□□□□□ -0.39
TRIM28-212ENST00000597995 MTM1Q13496 603 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 CYTH1Q15438 398 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 EFHC2Q5JST6 749 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 ERAP2Q6P179 960 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 DNAJC24Q6P3W2 148 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 BRAT1Q6PJG6 821 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 OGFOD3Q6PK18 319 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 USP53Q70EK8 1073 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 RD3Q7Z3Z2 195 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 ARFGAP1Q8N6T3 406 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 SGF29Q96ES7 293 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 WDR92Q96MX6 357 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 TUBGCP5Q96RT8 1024 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 NCAPGQ9BPX3 1015 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 HAUS4Q9H6D7 363 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 PCDH12Q9NPG4 1184 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 DONSONQ9NYP3 566 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 COQ6Q9Y2Z9 468 aa12.6□□□□□ -0.39
TRIM28-212ENST00000597995 LRRK1Q38SD2 2015 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 ATMINO43313 823 aaPredicted RBP12.59□□□□□ -0.39
TRIM28-212ENST00000597995 PIGNO95427 931 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 HOXC4P09017 264 aaPredicted RBP12.59□□□□□ -0.39
TRIM28-212ENST00000597995 JMJD7P0C870 316 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 LIPCP11150 499 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 SKILP12757 684 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 PRKCIP41743 596 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 LIG3P49916 1009 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 AIF1P55008 147 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 FANCCQ00597 558 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 MAMLD1Q13495 774 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 ASIC2Q16515 512 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 LINC00303Q3SY05 128 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 FILIP1LQ4L180 1135 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 PLEKHA7Q6IQ23 1121 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 JAMLQ86YT9 394 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 CCNJLQ8IV13 435 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 EXD3Q8N9H8 876 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 NETO2Q8NC67 525 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 CNPY3Q9BT09 278 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 FOXP3Q9BZS1 431 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 TRIM7Q9C029 511 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 SEPT10Q9P0V9 454 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 UBA2Q9UBT2 640 aaPredicted RBP12.59□□□□□ -0.39
TRIM28-212ENST00000597995 FZD10Q9ULW2 581 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 ATP8A1Q9Y2Q0 1164 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 OR1A2Q9Y585 309 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 SPTA1P02549 2419 aa12.59□□□□□ -0.39
TRIM28-212ENST00000597995 TNFRSF10CO14798 259 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 FGF10O15520 208 aaPredicted RBP12.58□□□□□ -0.4
TRIM28-212ENST00000597995 CREB3O43889 395 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 CCDC172P0C7W6 258 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 SFTPCP11686 197 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 KELP23276 732 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 HTR7P34969 479 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 MMP12P39900 470 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 CSNK1DP48730 415 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 CSRP3P50461 194 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 KIAA1024LP59773 190 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 TGIF1Q15583 401 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 CERCAMQ5T4B2 595 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 CFAP58Q5T655 872 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 HGSNATQ68CP4 663 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 SCYL2Q6P3W7 929 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 FAM46DQ8NEK8 389 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 OR56A4Q8NGH8 313 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 EXOC2Q96KP1 924 aa12.58□□□□□ -0.4
TRIM28-212ENST00000597995 CMKLR1Q99788 373 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms