RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 CXorf40AQ8TE69 158 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 PDCD6IPQ8WUM4 868 aaKnown RBP11.21□□□□□ -0.61
VRK3-210ENST00000596121 TADA1Q96BN2 335 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 KLHDC7BQ96G42 594 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 HES6Q96HZ4 224 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 RBM41Q96IZ5 413 aaKnown RBP11.21□□□□□ -0.61
VRK3-210ENST00000596121 ZNF830Q96NB3 372 aaPredicted RBP11.21□□□□□ -0.61
VRK3-210ENST00000596121 ELF4Q99607 663 aaPredicted RBP11.21□□□□□ -0.61
VRK3-210ENST00000596121 FAM118BQ9BPY3 351 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 OSBPL8Q9BZF1 889 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 SEPT10Q9P0V9 454 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 AMACRQ9UHK6 382 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 AMFRQ9UKV5 643 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 PNMA8BQ9ULN7 279 aaPredicted RBP11.21□□□□□ -0.61
VRK3-210ENST00000596121 CHKBQ9Y259 395 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.21□□□□□ -0.61
VRK3-210ENST00000596121 TTLL3Q9Y4R7 772 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 HS3ST3A1Q9Y663 406 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 SPEGQ15772 3267 aa11.21□□□□□ -0.62
VRK3-210ENST00000596121 TCRBV7S2A1N4TA0A589 114 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 NPIPB15A6NHN6 443 aaPredicted RBP11.2□□□□□ -0.62
VRK3-210ENST00000596121 TM7SF2O76062 418 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 CPP00450 1065 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 ALPIP09923 528 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 LHCGRP22888 699 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 HNF1BP35680 557 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 CD86P42081 329 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 PFN3P60673 137 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 COPS2P61201 443 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 ELP6Q0PNE2 266 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 SLC14A1Q13336 389 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 FZD2Q14332 565 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 IRF4Q15306 451 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 CNGA3Q16281 694 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 SLC45A4Q5BKX6 768 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 ZNF542PQ5EBM4 170 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 CFAP58Q5T655 872 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 N4BP2L1Q5TBK1 243 aaPredicted RBP11.2□□□□□ -0.62
VRK3-210ENST00000596121 PSAPL1Q6NUJ1 521 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 ERAP2Q6P179 960 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 KYAT3Q6YP21 454 aaKnown RBP11.2□□□□□ -0.62
VRK3-210ENST00000596121 RFLNAQ6ZTI6 216 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 KANSL1Q7Z3B3 1105 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 GATAD2AQ86YP4 633 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 RNF10Q8N5U6 811 aaKnown RBP11.2□□□□□ -0.62
VRK3-210ENST00000596121 PLA2G15Q8NCC3 412 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 SAP25Q8TEE9 199 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 P3H4Q92791 437 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 IMP4Q96G21 291 aaKnown RBP11.2□□□□□ -0.62
VRK3-210ENST00000596121 AGAP3Q96P47 875 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 MCCC1Q96RQ3 725 aaPredicted RBP11.2□□□□□ -0.62
VRK3-210ENST00000596121 TDRD1Q9BXT4 1180 aaKnown RBP11.2□□□□□ -0.62
VRK3-210ENST00000596121 BRD8Q9H0E9 1235 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 KCNF1Q9H3M0 494 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 ERVMER34-1Q9H9K5 563 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 LZTFL1Q9NQ48 299 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 GDF3Q9NR23 364 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 KLF15Q9UIH9 416 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 PPIL1Q9Y3C6 166 aa11.2□□□□□ -0.62
VRK3-210ENST00000596121 ARID1BQ8NFD5 2236 aaPredicted RBP11.2□□□□□ -0.62
VRK3-210ENST00000596121 SPAARA0A1B0GVQ0 90 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 CFAP69A5D8W1 941 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 A6NNZ2 444 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 APOC4-APOC2K7ER74 178 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 PPP1R12AO14974 1030 aaPredicted RBP11.19□□□□□ -0.62
VRK3-210ENST00000596121 PCDHGA12O60330 932 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 RECQL5O94762 991 aaPredicted RBP11.19□□□□□ -0.62
VRK3-210ENST00000596121 HEXIM1O94992 359 aaKnown RBP11.19□□□□□ -0.62
VRK3-210ENST00000596121 APOC2P02655 101 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 RXRGP48443 463 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 NOVA1P51513 510 aaKnown RBP11.19□□□□□ -0.62
VRK3-210ENST00000596121 POLR2LP62875 67 aaKnown RBP11.19□□□□□ -0.62
VRK3-210ENST00000596121 OTUD4Q01804 1114 aaKnown RBP11.19□□□□□ -0.62
VRK3-210ENST00000596121 OVGP1Q12889 678 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 EIF2B5Q13144 721 aaKnown RBP11.19□□□□□ -0.62
VRK3-210ENST00000596121 AGERQ15109 404 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 NOMO1Q15155 1222 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 CDKN3Q16667 212 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 TEX44Q53QW1 395 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 ARMC12Q5T9G4 340 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 KCTD16Q68DU8 428 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 ZNF662Q6ZS27 426 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 HSD11B1LQ7Z5J1 315 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 PTAR1Q7Z6K3 402 aaPredicted RBP11.19□□□□□ -0.62
VRK3-210ENST00000596121 ZSCAN30Q86W11 494 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 NAXDQ8IW45 347 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 DENND6BQ8NEG7 585 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 SPATA22Q8NHS9 363 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 BAHD1Q8TBE0 780 aaPredicted RBP11.19□□□□□ -0.62
VRK3-210ENST00000596121 ACTL9Q8TC94 416 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 TFB1MQ8WVM0 346 aaKnown RBP11.19□□□□□ -0.62
VRK3-210ENST00000596121 SCRN2Q96FV2 425 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 TEKT5Q96M29 485 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 COQ10AQ96MF6 247 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 QKIQ96PU8 341 aaKnown RBP eCLIP11.19□□□□□ -0.62
VRK3-210ENST00000596121 TRIB3Q96RU7 358 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 RBM15Q96T37 977 aaKnown RBP eCLIP11.19□□□□□ -0.62
VRK3-210ENST00000596121 GLOD4Q9HC38 313 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 UCKL1Q9NWZ5 548 aa11.19□□□□□ -0.62
VRK3-210ENST00000596121 PCOLCE2Q9UKZ9 415 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms