RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 E2F1Q01094 437 aa15.34■□□□□ 0.05
TRIM28-203ENST00000593582 PPARDQ03181 441 aa15.34■□□□□ 0.05
TRIM28-203ENST00000593582 ITKQ08881 620 aa15.34■□□□□ 0.05
TRIM28-203ENST00000593582 RALGDSQ12967 914 aa15.34■□□□□ 0.05
TRIM28-203ENST00000593582 IFI16Q16666 785 aaKnown RBP15.34■□□□□ 0.05
TRIM28-203ENST00000593582 PRRT3Q5FWE3 981 aa15.34■□□□□ 0.05
TRIM28-203ENST00000593582 FAXCQ5TGI0 409 aa15.34■□□□□ 0.05
TRIM28-203ENST00000593582 LIPIQ6XZB0 460 aa15.34■□□□□ 0.05
TRIM28-203ENST00000593582 MARCH9Q86YJ5 346 aa15.34■□□□□ 0.05
TRIM28-203ENST00000593582 PHACTR4Q8IZ21 702 aa15.34■□□□□ 0.05
TRIM28-203ENST00000593582 TEX26Q8N6G2 289 aa15.34■□□□□ 0.05
TRIM28-203ENST00000593582 FAM181AQ8N9Y4 354 aa15.34■□□□□ 0.05
TRIM28-203ENST00000593582 RAPGEF5Q92565 580 aa15.34■□□□□ 0.05
TRIM28-203ENST00000593582 APOLD1Q96LR9 279 aa15.34■□□□□ 0.05
TRIM28-203ENST00000593582 ZNF830Q96NB3 372 aaPredicted RBP15.34■□□□□ 0.05
TRIM28-203ENST00000593582 POLR1EQ9GZS1 481 aaKnown RBP15.34■□□□□ 0.05
TRIM28-203ENST00000593582 CCDC86Q9H6F5 360 aaKnown RBP15.34■□□□□ 0.05
TRIM28-203ENST00000593582 USP29Q9HBJ7 922 aa15.34■□□□□ 0.05
TRIM28-203ENST00000593582 NCKIPSDQ9NZQ3 722 aa15.34■□□□□ 0.05
TRIM28-203ENST00000593582 CFAP47Q6ZTR5 3102 aa15.34■□□□□ 0.05
TRIM28-203ENST00000593582 LAMA5O15230 3695 aa15.33■□□□□ 0.05
TRIM28-203ENST00000593582 LRRD1A4D1F6 860 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 A8MX80 341 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 MATN3O15232 486 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 MAP3K6O95382 1288 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 CPP00450 1065 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 CCNCP24863 283 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 DUSP3P51452 185 aaPredicted RBP15.33■□□□□ 0.04
TRIM28-203ENST00000593582 MTM1Q13496 603 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 ACOX1Q15067 660 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 ODF2Q5BJF6 829 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 ARMC12Q5T9G4 340 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 HES3Q5TGS1 186 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 ZCCHC8Q6NZY4 707 aaKnown RBP15.33■□□□□ 0.04
TRIM28-203ENST00000593582 PQLC3Q8N755 202 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 PDCD7Q8N8D1 485 aaKnown RBP15.33■□□□□ 0.04
TRIM28-203ENST00000593582 ATL2Q8NHH9 583 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.33■□□□□ 0.04
TRIM28-203ENST00000593582 FATE1Q969F0 183 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 TBATAQ96M53 351 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 TSGA13Q96PP4 275 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 RNF157Q96PX1 679 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 IL12RB2Q99665 862 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 SEMA3CQ99985 751 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 APOOQ9BUR5 198 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 MAK16Q9BXY0 300 aaKnown RBP15.33■□□□□ 0.04
TRIM28-203ENST00000593582 B4GALT6Q9UBX8 382 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 PHTF1Q9UMS5 762 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 OR1A2Q9Y585 309 aa15.33■□□□□ 0.04
TRIM28-203ENST00000593582 ZNF487B1APH4 448 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 TPP1O14773 563 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 KRT37O76014 449 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 PGLSO95336 258 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 CYP2A6P11509 494 aaPredicted RBP15.32■□□□□ 0.04
TRIM28-203ENST00000593582 KRT10P13645 584 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 CCNB1P14635 433 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 CES1P23141 567 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 SLC1A1P43005 524 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 GBE1Q04446 702 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 TRAF2Q12933 501 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 NFATC4Q14934 902 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 TCEAL1Q15170 157 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 DEFB133Q30KQ1 61 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 LRRC38Q5VT99 294 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 ENPP7Q6UWV6 458 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 USP45Q70EL2 814 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 VSIG1Q86XK7 387 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 HID1Q8IV36 788 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 RBFAQ8N0V3 343 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 NDUFAF2Q8N183 169 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 TC2NQ8N9U0 490 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 CCNYQ8ND76 341 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 MAML1Q92585 1016 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 LRRC61Q9BV99 259 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 TCEAL2Q9H3H9 227 aaPredicted RBP15.32■□□□□ 0.04
TRIM28-203ENST00000593582 RBM22Q9NW64 420 aaKnown RBP eCLIP15.32■□□□□ 0.041e-11■■■■■ 40.4
TRIM28-203ENST00000593582 KCTD5Q9NXV2 234 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 AMACRQ9UHK6 382 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 PNMA8BQ9ULN7 279 aaPredicted RBP15.32■□□□□ 0.04
TRIM28-203ENST00000593582 TTLL3Q9Y4R7 772 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 RAI2Q9Y5P3 530 aa15.32■□□□□ 0.04
TRIM28-203ENST00000593582 PTPRBP23467 1997 aa15.31■□□□□ 0.04
TRIM28-203ENST00000593582 ARID1BQ8NFD5 2236 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-203ENST00000593582 TRABD2BA6NFA1 517 aa15.31■□□□□ 0.04
TRIM28-203ENST00000593582 SRRM3A6NNA2 597 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-203ENST00000593582 LMO7DNF2Z398 122 aa15.31■□□□□ 0.04
TRIM28-203ENST00000593582 CACNB4O00305 520 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-203ENST00000593582 SPOPO43791 374 aa15.31■□□□□ 0.04
TRIM28-203ENST00000593582 GCATO75600 419 aa15.31■□□□□ 0.04
TRIM28-203ENST00000593582 CAPNS1P04632 268 aa15.31■□□□□ 0.04
TRIM28-203ENST00000593582 GP1BAP07359 652 aa15.31■□□□□ 0.04
TRIM28-203ENST00000593582 CTSEP14091 401 aa15.31■□□□□ 0.04
TRIM28-203ENST00000593582 TSHRP16473 764 aa15.31■□□□□ 0.04
TRIM28-203ENST00000593582 VIPR1P32241 457 aa15.31■□□□□ 0.04
TRIM28-203ENST00000593582 MAGEA1P43355 309 aa15.31■□□□□ 0.04
TRIM28-203ENST00000593582 HK3P52790 923 aa15.31■□□□□ 0.04
TRIM28-203ENST00000593582 CLDN6P56747 220 aa15.31■□□□□ 0.04
TRIM28-203ENST00000593582 CAMK2BQ13554 666 aa15.31■□□□□ 0.04
TRIM28-203ENST00000593582 CNGA3Q16281 694 aa15.31■□□□□ 0.04
TRIM28-203ENST00000593582 ALG1LQ6GMV1 187 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms