RNA–Protein interactions for RNA: ENST00000584796.5

VAPA-208, Transcript of VAMP associated protein A, human

TSL 3

Gene VAPA, Length 654 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VAPA-208	ENST00000584796	PATL1	Q86TB9	770 aa	Known RBP	2.98	□□□□□ -1.93
VAPA-208	ENST00000584796	DCUN1D3	Q8IWE4	304 aa		2.98	□□□□□ -1.93
VAPA-208	ENST00000584796	RBFA	Q8N0V3	343 aa		2.98	□□□□□ -1.93
VAPA-208	ENST00000584796	VPS52	Q8N1B4	723 aa		2.98	□□□□□ -1.93
VAPA-208	ENST00000584796	OR1N1	Q8NGS0	311 aa		2.98	□□□□□ -1.93
VAPA-208	ENST00000584796	BICD1	Q96G01	975 aa		2.98	□□□□□ -1.93
VAPA-208	ENST00000584796	TXNDC15	Q96J42	360 aa		2.98	□□□□□ -1.93
VAPA-208	ENST00000584796	TRIM31	Q9BZY9	425 aa		2.98	□□□□□ -1.93
VAPA-208	ENST00000584796	TAF1D	Q9H5J8	278 aa	Predicted RBP	2.98	□□□□□ -1.93
VAPA-208	ENST00000584796	CHPF2	Q9P2E5	772 aa		2.98	□□□□□ -1.93
VAPA-208	ENST00000584796	EDC4	Q6P2E9	1401 aa	Known RBP	2.98	□□□□□ -1.93
VAPA-208	ENST00000584796	SNED1	Q8TER0	1413 aa		2.98	□□□□□ -1.93
VAPA-208	ENST00000584796	SCN9A	Q15858	1988 aa		2.98	□□□□□ -1.93
VAPA-208	ENST00000584796	USP42	Q9H9J4	1324 aa	Known RBP	2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	DYTN	A2CJ06	578 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	MAGEA13P	A6NCF6	341 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	DDTL	A6NHG4	134 aa	Predicted RBP	2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	AQP12B	A6NM10	295 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	EFCAB8	A8MWE9	144 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	NPIPB11	E5RHQ5	1161 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	TULP2	O00295	520 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	TPD52L2	O43399	206 aa	Known RBP	2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	RFC1	P35251	1148 aa	Predicted RBP	2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	TMF1	P82094	1093 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	ARL16	Q0P5N6	197 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	MYBPH	Q13203	477 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	CEP85L	Q5SZL2	805 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	CST9	Q5W186	159 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	ADAM5	Q6NVV9	412 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	AADACL2	Q6P093	401 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	GALNT7	Q86SF2	657 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	EXOC3L1	Q86VI1	746 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	LMNTD1	Q8N9Z9	388 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	POC1A	Q8NBT0	407 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	SPATA20	Q8TB22	786 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	FAM71B	Q8TC56	605 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	CAPNS2	Q96L46	248 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	CCDC138	Q96M89	665 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	TEFM	Q96QE5	360 aa	Known RBP	2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	MSTO1	Q9BUK6	570 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	CADM1	Q9BY67	442 aa	Known RBP	2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	PCGF6	Q9BYE7	350 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	LHPP	Q9H008	270 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	CLK4	Q9HAZ1	481 aa	Known RBP	2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	UPB1	Q9UBR1	384 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	RCE1	Q9Y256	329 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	NUP98	P52948	1817 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	LAMB1	P07942	1786 aa		2.97	□□□□□ -1.93
VAPA-208	ENST00000584796	RNF123	Q5XPI4	1314 aa		2.96	□□□□□ -1.93
VAPA-208	ENST00000584796	PCDH11X	Q9BZA7	1347 aa		2.96	□□□□□ -1.93
VAPA-208	ENST00000584796	PCDH11Y	Q9BZA8	1340 aa		2.96	□□□□□ -1.93
VAPA-208	ENST00000584796	SAA2-SAA4	A0A096LPE2	208 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	CCDC194	A0A1B0GVG4	234 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796		A0A1B0GVM2	712 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	KDM4E	B2RXH2	506 aa	Predicted RBP	2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	PRAC2	D3DTV9	90 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	PAK4	O96013	591 aa	Predicted RBP	2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	ANOS1	P23352	680 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	DCTD	P32321	178 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	DPP6	P42658	865 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	CRKL	P46109	303 aa	Known RBP	2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	DLG1	Q12959	904 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	HDAC1	Q13547	482 aa	Predicted RBP	2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	DCTN1	Q14203	1278 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	SPARCL1	Q14515	664 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	DEFB115	Q30KQ5	88 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	SETMAR	Q53H47	684 aa	Predicted RBP	2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	TTC22	Q5TAA0	569 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	TMEM268	Q5VZI3	342 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	NCAPH2	Q6IBW4	605 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	KRTAP5-4	Q6L8H1	288 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	NFRKB	Q6P4R8	1299 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	C9orf139	Q6ZV77	190 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	C2CD5	Q86YS7	1000 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	TMC8	Q8IU68	726 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	CCAR1	Q8IX12	1150 aa	Known RBP	2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	EXOC8	Q8IYI6	725 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	DEPTOR	Q8TB45	409 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	GPT2	Q8TD30	523 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	STYX	Q8WUJ0	223 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	SORCS1	Q8WY21	1168 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	TAF15	Q92804	592 aa	Known RBP eCLIP	2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	KCNJ9	Q92806	393 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	ARRDC3	Q96B67	414 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	PIGS	Q96S52	555 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	RTKN	Q9BST9	563 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	NPFFR1	Q9GZQ6	430 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	ABHD16B	Q9H3Z7	469 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	DAPP1	Q9UN19	280 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	ADAM18	Q9Y3Q7	739 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	TTC28	Q96AY4	2481 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	MUC3A	Q02505	3323 aa		2.96	□□□□□ -1.94
VAPA-208	ENST00000584796	EVC2	Q86UK5	1308 aa		2.95	□□□□□ -1.94
VAPA-208	ENST00000584796	OTOF	Q9HC10	1997 aa		2.95	□□□□□ -1.94
VAPA-208	ENST00000584796	C17orf100	A8MU93	164 aa		2.95	□□□□□ -1.94
VAPA-208	ENST00000584796	HNRNPR	O43390	633 aa	Known RBP	2.95	□□□□□ -1.94
VAPA-208	ENST00000584796	LMX1B	O60663	402 aa		2.95	□□□□□ -1.94
VAPA-208	ENST00000584796	TNFRSF6B	O95407	300 aa		2.95	□□□□□ -1.94
VAPA-208	ENST00000584796	AFP	P02771	609 aa	Known RBP	2.95	□□□□□ -1.94
VAPA-208	ENST00000584796	CYP21A2	P08686	494 aa		2.95	□□□□□ -1.94

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