RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	PCDH10	Q9P2E7	1040 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	TEKT2	Q9UIF3	430 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	APPL1	Q9UKG1	709 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PADI3	Q9ULW8	664 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	UBQLN1	Q9UMX0	589 aa	Known RBP	11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PCDHGA2	Q9Y5H1	932 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	RANBP2	P49792	3224 aa	Known RBP	11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	BCLAF3	A2AJT9	711 aa	Known RBP	11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	FAM159B	A6NKW6	160 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PLOD2	O00469	737 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	EPHA3	P29320	983 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	RPL9	P32969	192 aa	Known RBP	11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	CRHR1	P34998	444 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PTPN5	P54829	565 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	NIPAL4	Q0D2K0	466 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	FBXL19	Q6PCT2	694 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	DHDDS	Q86SQ9	333 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	RNF180	Q86T96	592 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	OR52K1	Q8NGK4	314 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	TRPC4AP	Q8TEL6	797 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PPP4R1	Q8TF05	950 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PAAF1	Q9BRP4	392 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SNX25	Q9H3E2	840 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	TXNDC16	Q9P2K2	825 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	CDH22	Q9UJ99	828 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PCDHA11	Q9Y5I1	949 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PLIN3	O60664	434 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ITGA2B	P08514	1039 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	TGM2	P21980	687 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SCNN1G	P51170	649 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	MRPS22	P82650	360 aa	Known RBP	11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PDK2	Q15119	407 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	KIAA0319	Q5VV43	1072 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	IYD	Q6PHW0	289 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PIGZ	Q86VD9	579 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	GLT1D1	Q96MS3	346 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	APOL5	Q9BWW9	433 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	TPK1	Q9H3S4	243 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	COG4	Q9H9E3	785 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	FAM105A	Q9NUU6	356 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	TMEM30A	Q9NV96	361 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	RRN3	Q9NYV6	651 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	POMP	Q9Y244	141 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	TRPV2	Q9Y5S1	764 aa		11.68	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063		A0A1B0GTW7	788 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	VSTM5	A8MXK1	200 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063		J3KRW8	73 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	DPYSL4	O14531	572 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	KLF11	O14901	512 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PEX1	O43933	1283 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PLOD3	O60568	738 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	HUS1	O60921	280 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PRKCG	P05129	697 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	LTA4H	P09960	611 aa	Known RBP	11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	RALB	P11234	206 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	MRPS15	P82914	257 aa	Known RBP	11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	CCDC153	Q494R4	210 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SLC9B2	Q86UD5	537 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	RTP4	Q96DX8	246 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SGF29	Q96ES7	293 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	FCRL3	Q96P31	734 aa	Predicted RBP	11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	YME1L1	Q96TA2	773 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PIP5K1A	Q99755	562 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ADAM2	Q99965	735 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	LIN28A	Q9H9Z2	209 aa	Known RBP	11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ATP13A1	Q9HD20	1204 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PFDN4	Q9NQP4	134 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	DGKB	Q9Y6T7	804 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	RNF103	O00237	685 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	HSPA4L	O95757	839 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	DNTT	P04053	509 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	GSTT2	P0CG29	244 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	GSTT2B	P0CG30	244 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ITGAX	P20702	1163 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PRKAR1B	P31321	381 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	NUDT2	P50583	147 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ACLY	P53396	1101 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	MED21	Q13503	144 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	DSC3	Q14574	896 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ZNF460	Q14592	562 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	DPYSL2	Q16555	572 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	DNAL1	Q4LDG9	190 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	IKBIP	Q70UQ0	350 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	RPS27L	Q71UM5	84 aa	Known RBP	11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PID1	Q7Z2X4	250 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ZNF598	Q86UK7	904 aa	Known RBP	11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SERINC5	Q86VE9	423 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	CBARP	Q8N350	705 aa	Predicted RBP	11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SGK3	Q96BR1	496 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ARMC5	Q96C12	935 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	MFSD3	Q96ES6	412 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	LENG8	Q96PV6	779 aa	Predicted RBP	11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ZNF670	Q9BS34	389 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	C11orf84	Q9BUA3	381 aa	Predicted RBP	11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	RPL26L1	Q9UNX3	145 aa	Known RBP	11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	NRP1	O14786	923 aa		11.67	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	MDM4	O15151	490 aa		11.67	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms