RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ATXN2Q99700 1313 aaKnown RBP6.45□□□□□ -1.38
SS18-214ENST00000580003 A6NLC8 198 aa6.44□□□□□ -1.38
SS18-214ENST00000580003 NPIPB11E5RHQ5 1161 aa6.44□□□□□ -1.38
SS18-214ENST00000580003 F9P00740 461 aa6.44□□□□□ -1.38
SS18-214ENST00000580003 IGHV4-30-4P0DP06 118 aa6.44□□□□□ -1.38
SS18-214ENST00000580003 AGAP20933 346 aa6.44□□□□□ -1.38
SS18-214ENST00000580003 HNRNPH1P31943 449 aaKnown RBP6.44□□□□□ -1.38
SS18-214ENST00000580003 STX2P32856 288 aa6.44□□□□□ -1.38
SS18-214ENST00000580003 CTCFP49711 727 aaPredicted RBP6.44□□□□□ -1.38
SS18-214ENST00000580003 GNAQP50148 359 aa6.44□□□□□ -1.38
SS18-214ENST00000580003 GRSF1Q12849 480 aaKnown RBP eCLIP6.44□□□□□ -1.38
SS18-214ENST00000580003 PRICKLE4Q2TBC4 344 aa6.44□□□□□ -1.38
SS18-214ENST00000580003 PPP6R3Q5H9R7 873 aaPredicted RBP6.44□□□□□ -1.38
SS18-214ENST00000580003 C9orf57Q5W0N0 161 aa6.44□□□□□ -1.38
SS18-214ENST00000580003 ARMC9Q7Z3E5 817 aa6.44□□□□□ -1.38
SS18-214ENST00000580003 ARMC8Q8IUR7 673 aa6.44□□□□□ -1.38
SS18-214ENST00000580003 TSPYL6Q8N831 410 aa6.44□□□□□ -1.38
SS18-214ENST00000580003 ADGRG7Q96K78 797 aa6.44□□□□□ -1.38
SS18-214ENST00000580003 EIF2AK1Q9BQI3 630 aaKnown RBP6.44□□□□□ -1.38
SS18-214ENST00000580003 SLC25A18Q9H1K4 315 aa6.44□□□□□ -1.38
SS18-214ENST00000580003 CNTNAP2Q9UHC6 1331 aa6.44□□□□□ -1.38
SS18-214ENST00000580003 LOC102724159A0A0B4J2E5 919 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 PPP1R3DO95685 299 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 AGR2O95994 175 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 SSTR2P30874 369 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 GAS1P54826 345 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 ECT2LQ008S8 904 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 PTP4A2Q12974 167 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 PWP2Q15269 919 aaKnown RBP6.43□□□□□ -1.38
SS18-214ENST00000580003 SF3B4Q15427 424 aaKnown RBP eCLIP6.43□□□□□ -1.38
SS18-214ENST00000580003 FAM69BQ5VUD6 431 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 SPSB3Q6PJ21 355 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 RHBDF2Q6PJF5 856 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 LCTLQ6UWM7 567 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 LINGO2Q7L985 606 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 SLC46A3Q7Z3Q1 461 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 LILRB1Q8NHL6 650 aaPredicted RBP6.43□□□□□ -1.38
SS18-214ENST00000580003 RRP36Q96EU6 259 aaKnown RBP6.43□□□□□ -1.38
SS18-214ENST00000580003 C1QTNF4Q9BXJ3 329 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 WDR26Q9H7D7 661 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 UBN1Q9NPG3 1134 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 SLC9A2Q9UBY0 812 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 PGAP2Q9UHJ9 254 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 SLCO3A1Q9UIG8 710 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 RCOR1Q9UKL0 485 aa6.43□□□□□ -1.38
SS18-214ENST00000580003 LRRC53A6NM62 1247 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 SEC14L5O43304 696 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 COMPP49747 757 aaPredicted RBP6.42□□□□□ -1.38
SS18-214ENST00000580003 COASYQ13057 564 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 SNTA1Q13424 505 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 GSTA3Q16772 222 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 AMZ1Q400G9 498 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 MMEL1Q495T6 779 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 ALFQ53S48 1182 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 SGO1Q5FBB7 561 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 ACAD10Q6JQN1 1059 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 DSELQ8IZU8 1212 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 ZNF114Q8NC26 417 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 CREB3L4Q8TEY5 395 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 ZUFSPQ96AP4 578 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 IGSF21Q96ID5 467 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 KXD1Q9BQD3 176 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 JMJD4Q9H9V9 463 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 DDX4Q9NQI0 724 aaKnown RBP6.42□□□□□ -1.38
SS18-214ENST00000580003 MALT1Q9UDY8 824 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 CAMK2AQ9UQM7 478 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 SCINQ9Y6U3 715 aa6.42□□□□□ -1.38
SS18-214ENST00000580003 A0A1B0GVC2 190 aa6.41□□□□□ -1.38
SS18-214ENST00000580003 CPED1A4D0V7 1026 aa6.41□□□□□ -1.38
SS18-214ENST00000580003 USP17L23D6RBM5 183 aa6.41□□□□□ -1.38
SS18-214ENST00000580003 TAF4O00268 1085 aa6.41□□□□□ -1.38
SS18-214ENST00000580003 CREB3O43889 395 aa6.41□□□□□ -1.38
SS18-214ENST00000580003 SHMT1P34896 483 aa6.41□□□□□ -1.38
SS18-214ENST00000580003 CPOXP36551 454 aa6.41□□□□□ -1.38
SS18-214ENST00000580003 EIF3BP55884 814 aaKnown RBP6.41□□□□□ -1.38
SS18-214ENST00000580003 RPL36AP83881 106 aaKnown RBP6.41□□□□□ -1.38
SS18-214ENST00000580003 DLG1Q12959 904 aa6.41□□□□□ -1.38
SS18-214ENST00000580003 FBXO46Q6PJ61 603 aaPredicted RBP6.41□□□□□ -1.38
SS18-214ENST00000580003 B3GNT6Q6ZMB0 384 aa6.41□□□□□ -1.38
SS18-214ENST00000580003 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.41□□□□□ -1.38
SS18-214ENST00000580003 MMS22LQ6ZRQ5 1243 aa6.41□□□□□ -1.38
SS18-214ENST00000580003 SLC35F3Q8IY50 421 aa6.41□□□□□ -1.38
SS18-214ENST00000580003 ZBTB2Q8N680 514 aa6.41□□□□□ -1.38
SS18-214ENST00000580003 SMRP1Q8NCR6 262 aa6.41□□□□□ -1.38
SS18-214ENST00000580003 CADM4Q8NFZ8 388 aa6.41□□□□□ -1.38
SS18-214ENST00000580003 SCMH1Q96GD3 660 aa6.41□□□□□ -1.38
SS18-214ENST00000580003 PLEKHA4Q9H4M7 779 aa6.41□□□□□ -1.38
SS18-214ENST00000580003 FBXO9Q9UK97 447 aaPredicted RBP6.41□□□□□ -1.38
SS18-214ENST00000580003 TMEM202A6NGA9 273 aa6.4□□□□□ -1.38
SS18-214ENST00000580003 SRRM3A6NNA2 597 aaPredicted RBP6.4□□□□□ -1.38
SS18-214ENST00000580003 SMTNL1A8MU46 457 aa6.4□□□□□ -1.38
SS18-214ENST00000580003 LDLRAD4O15165 306 aa6.4□□□□□ -1.38
SS18-214ENST00000580003 SLC16A5O15375 505 aa6.4□□□□□ -1.38
SS18-214ENST00000580003 TNFSF14O43557 240 aa6.4□□□□□ -1.38
SS18-214ENST00000580003 HOXB5P09067 269 aa6.4□□□□□ -1.38
SS18-214ENST00000580003 EFNB3Q15768 340 aa6.4□□□□□ -1.38
SS18-214ENST00000580003 MTSS1LQ765P7 747 aa6.4□□□□□ -1.38
SS18-214ENST00000580003 HUS1BQ8NHY5 278 aa6.4□□□□□ -1.38
SS18-214ENST00000580003 ZNF385AQ96PM9 386 aaKnown RBP6.4□□□□□ -1.38
SS18-214ENST00000580003 SLITRK1Q96PX8 696 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms