RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 MAP1BP46821 2468 aaKnown RBP24■■□□□ 1.43
SHMT1-206ENST00000579558 TRIM38O00635 465 aa24■■□□□ 1.43
SHMT1-206ENST00000579558 SIGLEC6O43699 453 aa24■■□□□ 1.43
SHMT1-206ENST00000579558 NDUFA10O95299 355 aa24■■□□□ 1.43
SHMT1-206ENST00000579558 PCCBP05166 539 aa24■■□□□ 1.43
SHMT1-206ENST00000579558 CCNB1P14635 433 aa24■■□□□ 1.43
SHMT1-206ENST00000579558 JUNDP17535 347 aa24■■□□□ 1.43
SHMT1-206ENST00000579558 NFKBIAP25963 317 aa24■■□□□ 1.43
SHMT1-206ENST00000579558 EIF2B5Q13144 721 aaKnown RBP24■■□□□ 1.43
SHMT1-206ENST00000579558 ZNF211Q13398 564 aaPredicted RBP24■■□□□ 1.43
SHMT1-206ENST00000579558 ARMC12Q5T9G4 340 aa24■■□□□ 1.43
SHMT1-206ENST00000579558 UNQ6494/PRO21346Q6UXR6 183 aa24■■□□□ 1.43
SHMT1-206ENST00000579558 CCDC13Q8IYE1 715 aa24■■□□□ 1.43
SHMT1-206ENST00000579558 OR4C6Q8NH72 309 aa24■■□□□ 1.43
SHMT1-206ENST00000579558 GOLPH3Q9H4A6 298 aa24■■□□□ 1.43
SHMT1-206ENST00000579558 AMACRQ9UHK6 382 aa24■■□□□ 1.43
SHMT1-206ENST00000579558 PHTF1Q9UMS5 762 aa24■■□□□ 1.43
SHMT1-206ENST00000579558 PCDHGA1Q9Y5H4 931 aa24■■□□□ 1.43
SHMT1-206ENST00000579558 ALG6Q9Y672 507 aa24■■□□□ 1.43
SHMT1-206ENST00000579558 EPN1Q9Y6I3 576 aaPredicted RBP24■■□□□ 1.43
SHMT1-206ENST00000579558 CEP295Q9C0D2 2601 aa23.99■■□□□ 1.43
SHMT1-206ENST00000579558 A0A0A6YYK5 440 aaPredicted RBP23.99■■□□□ 1.43
SHMT1-206ENST00000579558 FAM221BA6H8Z2 402 aa23.99■■□□□ 1.43
SHMT1-206ENST00000579558 NEMP2A6NFY4 417 aa23.99■■□□□ 1.43
SHMT1-206ENST00000579558 C1QTNF9BB2RNN3 333 aa23.99■■□□□ 1.43
SHMT1-206ENST00000579558 PSTPIP1O43586 416 aa23.99■■□□□ 1.43
SHMT1-206ENST00000579558 RECQL5O94762 991 aaPredicted RBP23.99■■□□□ 1.43
SHMT1-206ENST00000579558 PGLSO95336 258 aa23.99■■□□□ 1.43
SHMT1-206ENST00000579558 IPO7O95373 1038 aaKnown RBP23.99■■□□□ 1.43
SHMT1-206ENST00000579558 C1QTNF9P0C862 333 aa23.99■■□□□ 1.43
SHMT1-206ENST00000579558 ALPPL2P10696 532 aa23.99■■□□□ 1.43
SHMT1-206ENST00000579558 ZFXP17010 805 aaPredicted RBP23.99■■□□□ 1.43
SHMT1-206ENST00000579558 ACADVLP49748 655 aa23.99■■□□□ 1.43
SHMT1-206ENST00000579558 DSC2Q02487 901 aa23.99■■□□□ 1.43
SHMT1-206ENST00000579558 MACC1Q6ZN28 852 aa23.99■■□□□ 1.43
SHMT1-206ENST00000579558 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP23.99■■□□□ 1.43
SHMT1-206ENST00000579558 ZNF548Q8NEK5 533 aaPredicted RBP23.99■■□□□ 1.43
SHMT1-206ENST00000579558 GATA6Q92908 595 aa23.99■■□□□ 1.43
SHMT1-206ENST00000579558 LGMNQ99538 433 aa23.99■■□□□ 1.43
SHMT1-206ENST00000579558 KLF15Q9UIH9 416 aa23.99■■□□□ 1.43
SHMT1-206ENST00000579558 RAI2Q9Y5P3 530 aa23.99■■□□□ 1.43
SHMT1-206ENST00000579558 PTPRBP23467 1997 aa23.98■■□□□ 1.43
SHMT1-206ENST00000579558 RFPL3O75679 317 aa23.98■■□□□ 1.43
SHMT1-206ENST00000579558 CYP2A6P11509 494 aaPredicted RBP23.98■■□□□ 1.43
SHMT1-206ENST00000579558 CKMT2P17540 419 aa23.98■■□□□ 1.43
SHMT1-206ENST00000579558 CES1P23141 567 aa23.98■■□□□ 1.43
SHMT1-206ENST00000579558 VIPR1P32241 457 aa23.98■■□□□ 1.43
SHMT1-206ENST00000579558 PPIDQ08752 370 aaKnown RBP23.98■■□□□ 1.43
SHMT1-206ENST00000579558 MTM1Q13496 603 aa23.98■■□□□ 1.43
SHMT1-206ENST00000579558 INPP5AQ14642 412 aa23.98■■□□□ 1.43
SHMT1-206ENST00000579558 ACOX1Q15067 660 aa23.98■■□□□ 1.43
SHMT1-206ENST00000579558 PROX2Q3B8N5 592 aa23.98■■□□□ 1.43
SHMT1-206ENST00000579558 ALG1LQ6GMV1 187 aa23.98■■□□□ 1.43
SHMT1-206ENST00000579558 DHRS13Q6UX07 377 aa23.98■■□□□ 1.43
SHMT1-206ENST00000579558 MFSD7Q6UXD7 560 aa23.98■■□□□ 1.43
SHMT1-206ENST00000579558 BTN2A2Q8WVV5 523 aa23.98■■□□□ 1.43
SHMT1-206ENST00000579558 TMEM121BQ9BXQ6 578 aaPredicted RBP23.98■■□□□ 1.43
SHMT1-206ENST00000579558 NLGN3Q9NZ94 848 aa23.98■■□□□ 1.43
SHMT1-206ENST00000579558 SCAMP1O15126 338 aa23.97■■□□□ 1.43
SHMT1-206ENST00000579558 HLA-DQB2P05538 268 aa23.97■■□□□ 1.43
SHMT1-206ENST00000579558 PEX5P50542 639 aa23.97■■□□□ 1.43
SHMT1-206ENST00000579558 DYNLT1P63172 113 aa23.97■■□□□ 1.43
SHMT1-206ENST00000579558 CNGA3Q16281 694 aa23.97■■□□□ 1.43
SHMT1-206ENST00000579558 C11orf63Q6NUN7 778 aa23.97■■□□□ 1.43
SHMT1-206ENST00000579558 NPNTQ6UXI9 565 aa23.97■■□□□ 1.43
SHMT1-206ENST00000579558 USP45Q70EL2 814 aa23.97■■□□□ 1.43
SHMT1-206ENST00000579558 TMPRSS7Q7RTY8 843 aa23.97■■□□□ 1.43
SHMT1-206ENST00000579558 PHACTR4Q8IZ21 702 aa23.97■■□□□ 1.43
SHMT1-206ENST00000579558 RBFAQ8N0V3 343 aa23.97■■□□□ 1.43
SHMT1-206ENST00000579558 LMX1AQ8TE12 382 aa23.97■■□□□ 1.43
SHMT1-206ENST00000579558 APOOQ9BUR5 198 aa23.97■■□□□ 1.43
SHMT1-206ENST00000579558 APOBEC3BQ9UH17 382 aaKnown RBP23.97■■□□□ 1.43
SHMT1-206ENST00000579558 OR1A2Q9Y585 309 aa23.97■■□□□ 1.43
SHMT1-206ENST00000579558 SPEGQ15772 3267 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 KCNK1O00180 336 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 AQP9O43315 295 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 HEXIM1O94992 359 aaKnown RBP23.96■■□□□ 1.43
SHMT1-206ENST00000579558 JCHAINP01591 159 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 C1SP09871 688 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 GIMD1P0DJR0 217 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 GM2AP17900 193 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 HTR1BP28222 390 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 DAB2P98082 770 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 AP1B1Q10567 949 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 NFATC4Q14934 902 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 PDK1Q15118 436 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 FAXCQ5TGI0 409 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 DENND2CQ68D51 928 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 RAD9BQ6WBX8 426 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 GALNT15Q8N3T1 639 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 PLA2G15Q8NCC3 412 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 TPCN2Q8NHX9 752 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 PIH1D2Q8WWB5 315 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 COQ10AQ96MF6 247 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 DUSP23Q9BVJ7 150 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 TCEAL2Q9H3H9 227 aaPredicted RBP23.96■■□□□ 1.43
SHMT1-206ENST00000579558 SPASTQ9UBP0 616 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 PNMA8BQ9ULN7 279 aaPredicted RBP23.96■■□□□ 1.43
SHMT1-206ENST00000579558 CSNK1G3Q9Y6M4 447 aa23.96■■□□□ 1.43
SHMT1-206ENST00000579558 RCCD1A6NED2 376 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms