RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 CTPS1P17812 591 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 CTNNA2P26232 953 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 EPHA8P29322 1005 aaPredicted RBP19.59■□□□□ 0.73
SS18-209ENST00000578595 IGFALSP35858 605 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 GRK6P43250 576 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 RABIFP47224 123 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 RWDD2BP57060 319 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 FOXK2Q01167 660 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 LRRC14Q15048 493 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 IRF4Q15306 451 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 FAM182AQ5T1J6 154 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 N4BP2L1Q5TBK1 243 aaPredicted RBP19.59■□□□□ 0.73
SS18-209ENST00000578595 USP45Q70EL2 814 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 DPPA4Q7L190 304 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 ABI3BPQ7Z7G0 1075 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 ZC3H18Q86VM9 953 aaKnown RBP19.59■□□□□ 0.73
SS18-209ENST00000578595 FAM174AQ8TBP5 190 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 ASB12Q8WXK4 309 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 BMFQ96LC9 184 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 AGAP3Q96P47 875 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 B4GALT6Q9UBX8 382 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 AMACRQ9UHK6 382 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 PHTF1Q9UMS5 762 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 GUCA1BQ9UMX6 200 aa19.59■□□□□ 0.73
SS18-209ENST00000578595 ARID1BQ8NFD5 2236 aaPredicted RBP19.59■□□□□ 0.73
SS18-209ENST00000578595 ARHGAP6O43182 974 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 HTRA2O43464 458 aaPredicted RBP19.58■□□□□ 0.72
SS18-209ENST00000578595 CES1P23141 567 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 CD86P42081 329 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 NR2C2P49116 596 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 IFI35P80217 286 aaPredicted RBP19.58■□□□□ 0.72
SS18-209ENST00000578595 FOXC1Q12948 553 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 RALGDSQ12967 914 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 ARHGEF7Q14155 803 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 TRIP6Q15654 476 aaKnown RBP19.58■□□□□ 0.72
SS18-209ENST00000578595 CCDC157Q569K6 752 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 SLC22A18ASQ8N1D0 253 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 UBL4BQ8N7F7 174 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 TFB1MQ8WVM0 346 aaKnown RBP19.58■□□□□ 0.72
SS18-209ENST00000578595 FATE1Q969F0 183 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 OLFM3Q96PB7 478 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 LENG8Q96PV6 779 aaPredicted RBP19.58■□□□□ 0.72
SS18-209ENST00000578595 KLF6Q99612 283 aaPredicted RBP19.58■□□□□ 0.72
SS18-209ENST00000578595 TSGA10Q9BZW7 698 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 BRD8Q9H0E9 1235 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 ERVMER34-1Q9H9K5 563 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 PCOLCE2Q9UKZ9 415 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 PACSIN2Q9UNF0 486 aaPredicted RBP19.58■□□□□ 0.72
SS18-209ENST00000578595 CHKBQ9Y259 395 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 BTBD3Q9Y2F9 522 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 PCDHA3Q9Y5H8 950 aa19.58■□□□□ 0.72
SS18-209ENST00000578595 LRP4O75096 1905 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 GOLGA6CA6NDK9 693 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 GOLGA6BA6NDN3 693 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 KRT86O43790 486 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 PCDHGA12O60330 932 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 ALPIP09923 528 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 GOLGA6DP0CG33 693 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 VIPR1P32241 457 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 COPS2P61201 443 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 BNIP3Q12983 259 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 PPP2R5EQ16537 467 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 ZNF542PQ5EBM4 170 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 LIPIQ6XZB0 460 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 DCP2Q8IU60 420 aaKnown RBP19.57■□□□□ 0.72
SS18-209ENST00000578595 LRRC57Q8N9N7 239 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 LPCAT1Q8NF37 534 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 MBNL1Q9NR56 388 aaKnown RBP19.57■□□□□ 0.72
SS18-209ENST00000578595 GOLGA6AQ9NYA3 693 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 FTSJ1Q9UET6 329 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 ADGRG1Q9Y653 693 aa19.57■□□□□ 0.72
SS18-209ENST00000578595 H7C0C1 242 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 RECQL5O94762 991 aaPredicted RBP19.56■□□□□ 0.72
SS18-209ENST00000578595 PDHA1P08559 390 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 ADRB1P08588 477 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 ATP5OP48047 213 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 ADCY2Q08462 1091 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 NIPAL4Q0D2K0 466 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 PTK2BQ14289 1009 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 PCSK7Q16549 785 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 TAZQ16635 292 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 HS1BP3Q53T59 392 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 NT5DC3Q86UY8 548 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 PARGQ86W56 976 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 EID2Q8N6I1 236 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 TP53I13Q8NBR0 393 aaPredicted RBP19.56■□□□□ 0.72
SS18-209ENST00000578595 CENPTQ96BT3 561 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 IL12RB2Q99665 862 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 TDRD1Q9BXT4 1180 aaKnown RBP19.56■□□□□ 0.72
SS18-209ENST00000578595 OSBPL8Q9BZF1 889 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 PCDH9Q9HC56 1237 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 CAPN6Q9Y6Q1 641 aa19.56■□□□□ 0.72
SS18-209ENST00000578595 NPIPB15A6NHN6 443 aaPredicted RBP19.55■□□□□ 0.72
SS18-209ENST00000578595 H3BM21 787 aa19.55■□□□□ 0.72
SS18-209ENST00000578595 CCDC175P0C221 793 aa19.55■□□□□ 0.72
SS18-209ENST00000578595 ZNF211Q13398 564 aaPredicted RBP19.55■□□□□ 0.72
SS18-209ENST00000578595 PTPRRQ15256 657 aa19.55■□□□□ 0.72
SS18-209ENST00000578595 SHBQ15464 509 aa19.55■□□□□ 0.72
SS18-209ENST00000578595 CNGA3Q16281 694 aa19.55■□□□□ 0.72
SS18-209ENST00000578595 WSCD2Q2TBF2 565 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms