RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 KIAA1324LA8MWY0 1029 aaPredicted RBP16.28■□□□□ 0.2
VPS53-218ENST00000575207 E2F3O00716 465 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 TNFRSF10CO14798 259 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 CLDN11O75508 207 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 F9P00740 461 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 CCNYL3P0C7X3 344 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 SETSIPP0DME0 302 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 CCNB1P14635 433 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 LTBQ06643 244 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 BIRC2Q13490 618 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 RAPGEF1Q13905 1077 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 SNAP47Q5SQN1 464 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 ANKRD40Q6AI12 368 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 WDR74Q6RFH5 385 aaPredicted RBP16.28■□□□□ 0.2
VPS53-218ENST00000575207 PRIMA1Q86XR5 153 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 ATP6V0D2Q8N8Y2 350 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 UBA3Q8TBC4 463 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 VOPP1Q96AW1 172 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 MCCC2Q9HCC0 563 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 CISHQ9NSE2 258 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 PADI1Q9ULC6 663 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 LIMCH1Q9UPQ0 1083 aa16.28■□□□□ 0.2
VPS53-218ENST00000575207 TRIM49P0CI25 452 aa16.27■□□□□ 0.2
VPS53-218ENST00000575207 TRIM49CP0CI26 452 aa16.27■□□□□ 0.2
VPS53-218ENST00000575207 KLK2P20151 261 aa16.27■□□□□ 0.2
VPS53-218ENST00000575207 KIAA1024LP59773 190 aa16.27■□□□□ 0.2
VPS53-218ENST00000575207 EIF4EBP2Q13542 120 aaPredicted RBP16.27■□□□□ 0.2
VPS53-218ENST00000575207 C1orf220Q5T0J3 134 aa16.27■□□□□ 0.2
VPS53-218ENST00000575207 CENPQQ7L2Z9 268 aaPredicted RBP16.27■□□□□ 0.2
VPS53-218ENST00000575207 NRROSQ86YC3 692 aa16.27■□□□□ 0.2
VPS53-218ENST00000575207 PLPP6Q8IY26 295 aa16.27■□□□□ 0.2
VPS53-218ENST00000575207 TMC2Q8TDI7 906 aa16.27■□□□□ 0.2
VPS53-218ENST00000575207 CT55Q8WUE5 264 aa16.27■□□□□ 0.2
VPS53-218ENST00000575207 PATE1Q8WXA2 126 aa16.27■□□□□ 0.2
VPS53-218ENST00000575207 INPP5DQ92835 1189 aa16.27■□□□□ 0.2
VPS53-218ENST00000575207 FAXDC2Q96IV6 333 aa16.27■□□□□ 0.2
VPS53-218ENST00000575207 GPR83Q9NYM4 423 aa16.27■□□□□ 0.2
VPS53-218ENST00000575207 IGLV3-25P01717 112 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 FOSL1P15407 271 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 PTGIRP43119 386 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 MTM1Q13496 603 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 PMF1Q6P1K2 205 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 BEND5Q7L4P6 421 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 SYVN1Q86TM6 617 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 NAGSQ8N159 534 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 ZNF808Q8N4W9 903 aaPredicted RBP16.26■□□□□ 0.19
VPS53-218ENST00000575207 TAS1R2Q8TE23 839 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 SLC35F5Q8WV83 523 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 GPR87Q9BY21 358 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 ZDHHC6Q9H6R6 413 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 LHX9Q9NQ69 397 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 DLL4Q9NR61 685 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 TAAR2Q9P1P5 351 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 SLC12A6Q9UHW9 1150 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 RPH3AQ9Y2J0 694 aaPredicted RBP16.26■□□□□ 0.19
VPS53-218ENST00000575207 NEU2Q9Y3R4 380 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 PCDHGA10Q9Y5H3 936 aa16.26■□□□□ 0.19
VPS53-218ENST00000575207 VPS13CQ709C8 3753 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 KIAA0754O94854 1291 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 EDN3P14138 238 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 LPOP22079 712 aaPredicted RBP16.25■□□□□ 0.19
VPS53-218ENST00000575207 KELP23276 732 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 TXLNAP40222 546 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 STAT6P42226 847 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 SERPINH1P50454 418 aaKnown RBP16.25■□□□□ 0.19
VPS53-218ENST00000575207 CDH4P55283 916 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 LAMB3Q13751 1172 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 AUHQ13825 339 aaKnown RBP16.25■□□□□ 0.19
VPS53-218ENST00000575207 AGERQ15109 404 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 TSR1Q2NL82 804 aaKnown RBP16.25■□□□□ 0.19
VPS53-218ENST00000575207 C5orf22Q49AR2 442 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 SYPL2Q5VXT5 272 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 CCDC73Q6ZRK6 1079 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 TTC7BQ86TV6 843 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 PARP9Q8IXQ6 854 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 OR10G6Q8NH81 332 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 RNF31Q96EP0 1072 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 AHCYL2Q96HN2 611 aaKnown RBP16.25■□□□□ 0.19
VPS53-218ENST00000575207 WRAP53Q9BUR4 548 aaKnown RBP16.25■□□□□ 0.19
VPS53-218ENST00000575207 ZMYND15Q9H091 742 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 ILKAPQ9H0C8 392 aaPredicted RBP16.25■□□□□ 0.19
VPS53-218ENST00000575207 CXXC4Q9H2H0 198 aa16.25■□□□□ 0.19
VPS53-218ENST00000575207 HECAQ9UBI9 543 aaPredicted RBP16.25■□□□□ 0.19
VPS53-218ENST00000575207 PIK3R2O00459 728 aa16.24■□□□□ 0.19
VPS53-218ENST00000575207 FBXO21O94952 628 aa16.24■□□□□ 0.19
VPS53-218ENST00000575207 PTPN4P29074 926 aa16.24■□□□□ 0.19
VPS53-218ENST00000575207 GKP32189 559 aa16.24■□□□□ 0.19
VPS53-218ENST00000575207 RGS7P49802 495 aa16.24■□□□□ 0.19
VPS53-218ENST00000575207 DNA2P51530 1060 aa16.24■□□□□ 0.19
VPS53-218ENST00000575207 TLE4Q04727 773 aa16.24■□□□□ 0.19
VPS53-218ENST00000575207 SLC20A2Q08357 652 aa16.24■□□□□ 0.19
VPS53-218ENST00000575207 IL10RAQ13651 578 aa16.24■□□□□ 0.19
VPS53-218ENST00000575207 SKOR2Q2VWA4 1001 aaPredicted RBP16.24■□□□□ 0.19
VPS53-218ENST00000575207 FAM26FQ5R3K3 315 aa16.24■□□□□ 0.19
VPS53-218ENST00000575207 IGFL3Q6UXB1 125 aa16.24■□□□□ 0.19
VPS53-218ENST00000575207 MRGPRGQ86SM5 289 aa16.24■□□□□ 0.19
VPS53-218ENST00000575207 TMEM174Q8WUU8 243 aa16.24■□□□□ 0.19
VPS53-218ENST00000575207 FUBP1Q96AE4 644 aaKnown RBP16.24■□□□□ 0.19
VPS53-218ENST00000575207 GSDMCQ9BYG8 508 aa16.24■□□□□ 0.19
VPS53-218ENST00000575207 BRD8Q9H0E9 1235 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms