RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 CCNJLQ8IV13 435 aa24.14■■□□□ 1.46
ATPAF1-213ENST00000574428 SIX5Q8N196 739 aa24.14■■□□□ 1.46
ATPAF1-213ENST00000574428 RANBP9Q96S59 729 aa24.14■■□□□ 1.46
ATPAF1-213ENST00000574428 ACBD3Q9H3P7 528 aa24.14■■□□□ 1.46
ATPAF1-213ENST00000574428 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP24.14■■□□□ 1.46
ATPAF1-213ENST00000574428 PHTF1Q9UMS5 762 aa24.14■■□□□ 1.46
ATPAF1-213ENST00000574428 KCTD3Q9Y597 815 aa24.14■■□□□ 1.46
ATPAF1-213ENST00000574428 CKAP5Q14008 2032 aa24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 FAM237BA0A1B0GVD1 139 aa24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 BUD23O43709 281 aaKnown RBP24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 SHBGP04278 402 aa24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 POLBP06746 335 aa24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 SEMG2Q02383 582 aa24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 SMAD1Q15797 465 aaKnown RBP24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 STEAP4Q687X5 459 aa24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 TMEM135Q86UB9 458 aa24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 UBALD2Q8IYN6 164 aa24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 GJD3Q8N144 294 aa24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 MDGA1Q8NFP4 955 aa24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 OR2W6PQ8NHA6 318 aa24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 BRSK1Q8TDC3 778 aa24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 SPOCK2Q92563 424 aa24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 SLC2A6Q9UGQ3 507 aa24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 PLAAQ9Y263 795 aa24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 MTF2Q9Y483 593 aaPredicted RBP24.14■■□□□ 1.45
ATPAF1-213ENST00000574428 TSPAN11A1L157 253 aa24.13■■□□□ 1.45
ATPAF1-213ENST00000574428 CAPN8A6NHC0 703 aa24.13■■□□□ 1.45
ATPAF1-213ENST00000574428 C16orf96A6NNT2 1141 aa24.13■■□□□ 1.45
ATPAF1-213ENST00000574428 H3BQF6 201 aa24.13■■□□□ 1.45
ATPAF1-213ENST00000574428 LDB2O43679 373 aa24.13■■□□□ 1.45
ATPAF1-213ENST00000574428 TARSP26639 723 aaKnown RBP24.13■■□□□ 1.45
ATPAF1-213ENST00000574428 HNF1BP35680 557 aa24.13■■□□□ 1.45
ATPAF1-213ENST00000574428 ANKRD20A4Q4UJ75 823 aa24.13■■□□□ 1.45
ATPAF1-213ENST00000574428 Q6ZS52 159 aa24.13■■□□□ 1.45
ATPAF1-213ENST00000574428 PARS2Q7L3T8 475 aaKnown RBP24.13■■□□□ 1.45
ATPAF1-213ENST00000574428 GLT6D1Q7Z4J2 308 aa24.13■■□□□ 1.45
ATPAF1-213ENST00000574428 UNC5BQ8IZJ1 945 aa24.13■■□□□ 1.45
ATPAF1-213ENST00000574428 ZNF687Q8N1G0 1237 aa24.13■■□□□ 1.45
ATPAF1-213ENST00000574428 PTCD2Q8WV60 388 aaKnown RBP24.13■■□□□ 1.45
ATPAF1-213ENST00000574428 ARRDC3Q96B67 414 aa24.13■■□□□ 1.45
ATPAF1-213ENST00000574428 MRM3Q9HC36 420 aaKnown RBP24.13■■□□□ 1.45
ATPAF1-213ENST00000574428 DKK3Q9UBP4 350 aa24.13■■□□□ 1.45
ATPAF1-213ENST00000574428 A0A1W2PQ67 120 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 A0A1W2PQF6 199 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 TCRBV9S1A1TA0A576 114 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 MROH6A6NGR9 719 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 A8MX80 341 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 USP1O94782 785 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 ABHD2P08910 425 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 CHRNB1P11230 501 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 TSHRP16473 764 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 COL9A1P20849 921 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 PHBP35232 272 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 STARD3Q14849 445 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 UBXN2BQ14CS0 331 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 UGP2Q16851 508 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 TRMT10BQ6PF06 316 aaKnown RBP24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 GSDMBQ8TAX9 411 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 FBF1Q8TES7 1133 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 RSPH9Q9H1X1 276 aaPredicted RBP24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 MAGEE1Q9HCI5 957 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 IL1RAPL1Q9NZN1 696 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 ZNF711Q9Y462 761 aa24.12■■□□□ 1.45
ATPAF1-213ENST00000574428 A0A087WUV0 522 aaPredicted RBP24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 ZCWPW2A0A1B0GU75 182 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 NPIPB15A6NHN6 443 aaPredicted RBP24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 PLK4O00444 970 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 TIMP2P16035 220 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 ITGB7P26010 798 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 STARD6P59095 220 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 POLR2LP62875 67 aaKnown RBP24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 PTPRCAPQ14761 206 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 SPANXN3Q5MJ09 141 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 TSTD2Q5T7W7 516 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 ESRP1Q6NXG1 681 aaKnown RBP24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 USP45Q70EL2 814 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 LYSMD3Q7Z3D4 306 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 IQCKQ8N0W5 287 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 SHDQ96IW2 340 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 NECAB3Q96P71 396 aaPredicted RBP24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 ZIM3Q96PE6 472 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 FOXQ1Q9C009 403 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 POLR3BQ9NW08 1133 aaPredicted RBP24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 UPK3BL1B0FP48 263 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 UPK3BL2E5RIL1 263 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 C1QTNF3-AMACRE9PGA6 284 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 SPAG6O75602 509 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 PIAS1O75925 651 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 CRTAMO95727 393 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 NUDT17P0C025 328 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 OAS2P29728 719 aaKnown RBP24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 FAM193AP78312 1265 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 SATB1Q01826 763 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 GPS2Q13227 327 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 TAF1AQ15573 450 aaPredicted RBP24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 NDUFAF2Q8N183 169 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 SERBP1Q8NC51 408 aaKnown RBP eCLIP24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 OR2T3Q8NH03 318 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 HCAR2Q8TDS4 363 aa24.11■■□□□ 1.45
ATPAF1-213ENST00000574428 SCRN2Q96FV2 425 aa24.11■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms