RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 C8orf4Q9NR00 106 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 A0A1B0GTW7 788 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.81□□□□□ -0.68
CCDC40-207ENST00000572253 SMIM10L2AP0DMW4 78 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 SMIM10L2BP0DMW5 78 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 IMPDH1P20839 514 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 HTR7P34969 479 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 ZBED5Q49AG3 693 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 GPRIN1Q7Z2K8 1008 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 CLYBLQ8N0X4 340 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 C19orf60Q96EN9 201 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 PCED1BQ96HM7 432 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 ZNF512Q96ME7 567 aaPredicted RBP10.81□□□□□ -0.68
CCDC40-207ENST00000572253 ATXN3LQ9H3M9 355 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 IL1RL2Q9HB29 575 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 TREX1Q9NSU2 369 aa10.81□□□□□ -0.68
CCDC40-207ENST00000572253 GIPC1O14908 333 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 ARNTP27540 789 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 NDST2P52849 883 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 PCSK7Q16549 785 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 HECTD2Q5U5R9 776 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 DENND5AQ6IQ26 1287 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 CBR4Q8N4T8 237 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 OR6P1Q8NGX9 317 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 DNAJB3Q8WWF6 145 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 TFAP2CQ92754 450 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 CCM2LQ9NUG4 571 aaPredicted RBP10.8□□□□□ -0.68
CCDC40-207ENST00000572253 CDH9Q9ULB4 789 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.8□□□□□ -0.68
CCDC40-207ENST00000572253 SHROOM3Q8TF72 1996 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 A0A0J9YYE9 177 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 DYTNA2CJ06 578 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 ILF2Q12905 390 aaKnown RBP10.8□□□□□ -0.68
CCDC40-207ENST00000572253 RAB41Q5JT25 222 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 C6orf10Q5SRN2 563 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 INTS11Q5TA45 600 aaKnown RBP10.8□□□□□ -0.68
CCDC40-207ENST00000572253 ARHGAP36Q6ZRI8 547 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 MIER2Q8N344 545 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 MFSD2AQ8NA29 543 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 GOLM1Q8NBJ4 401 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 OR9I1Q8NGQ6 314 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 DQX1Q8TE96 717 aaKnown RBP10.8□□□□□ -0.68
CCDC40-207ENST00000572253 ADI1Q9BV57 179 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 TSPYL2Q9H2G4 693 aaPredicted RBP10.8□□□□□ -0.68
CCDC40-207ENST00000572253 ALG9Q9H6U8 611 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 VWA7Q9Y334 891 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 ATP6AP2A0A1C7CYW4 349 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 MYBPHLA2RUH7 354 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 ZNF701M0R085 212 aaPredicted RBP10.8□□□□□ -0.68
CCDC40-207ENST00000572253 ATP6AP2O75787 350 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 KCNA5P22460 613 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 YWHAQP27348 245 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 EPHX2P34913 555 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 CDH15P55291 814 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 WNT3AP56704 352 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 NHSL2Q5HYW2 709 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 CLEC6AQ6EIG7 209 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 ZNF280DQ6N043 979 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 HMBOX1Q6NT76 420 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 LRRC49Q8IUZ0 686 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 HMGCLL1Q8TB92 370 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 CYGBQ8WWM9 190 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 EXT2Q93063 718 aa10.8□□□□□ -0.68
CCDC40-207ENST00000572253 LIN28AQ9H9Z2 209 aaKnown RBP10.8□□□□□ -0.68
CCDC40-207ENST00000572253 SOCS2O14508 198 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 CRCPO75575 148 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 MYL3P08590 195 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 SMPD1P17405 629 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 ATP6V1B2P21281 511 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 HMOX2P30519 316 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 ADRA1AP35348 466 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 SERPINH1P50454 418 aaKnown RBP10.79□□□□□ -0.68
CCDC40-207ENST00000572253 ATP6V0D1P61421 351 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 ITKQ08881 620 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 BRMS1LQ5PSV4 323 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 ZNF554Q86TJ5 538 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 DDIASQ8IXT1 998 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 SNX31Q8N9S9 440 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 THAP11Q96EK4 314 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 TBC1D23Q9NUY8 699 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 TIMM13Q9Y5L4 95 aaPredicted RBP10.79□□□□□ -0.68
CCDC40-207ENST00000572253 CLOCKO15516 846 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 TPST1O60507 370 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 SEC24DO94855 1032 aaPredicted RBP10.79□□□□□ -0.68
CCDC40-207ENST00000572253 HLA-DQB2P05538 268 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 SLC26A3P40879 764 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 CHRNA4P43681 627 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 LEPRP48357 1165 aaKnown RBP10.79□□□□□ -0.68
CCDC40-207ENST00000572253 PITRM1Q5JRX3 1037 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 ACBD5Q5T8D3 534 aaPredicted RBP10.79□□□□□ -0.68
CCDC40-207ENST00000572253 ZNF467Q7Z7K2 595 aaPredicted RBP10.79□□□□□ -0.68
CCDC40-207ENST00000572253 ZMIZ2Q8NF64 920 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 FNDC8Q8TC99 324 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 CENPNQ96H22 339 aaPredicted RBP10.79□□□□□ -0.68
CCDC40-207ENST00000572253 SLC45A3Q96JT2 553 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 OLFM1Q99784 485 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 SLC39A3Q9BRY0 314 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 KANSL1LA0AUZ9 987 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 MYF6P23409 242 aa10.79□□□□□ -0.68
CCDC40-207ENST00000572253 MERTKQ12866 999 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms