RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ZNF148Q9UQR1 794 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 R3HDM2Q9Y2K5 976 aaKnown RBP20.74■□□□□ 0.91
VPS53-210ENST00000571456 GOLGA6CA6NDK9 693 aa20.73■□□□□ 0.91
VPS53-210ENST00000571456 GOLGA6BA6NDN3 693 aa20.73■□□□□ 0.91
VPS53-210ENST00000571456 TSPAN6O43657 245 aa20.73■□□□□ 0.91
VPS53-210ENST00000571456 GCATO75600 419 aa20.73■□□□□ 0.91
VPS53-210ENST00000571456 ANXA9O76027 345 aa20.73■□□□□ 0.91
VPS53-210ENST00000571456 GOLGA6DP0CG33 693 aa20.73■□□□□ 0.91
VPS53-210ENST00000571456 TNNT3P45378 269 aaPredicted RBP20.73■□□□□ 0.91
VPS53-210ENST00000571456 ADPRHP54922 357 aa20.73■□□□□ 0.91
VPS53-210ENST00000571456 RPL6Q02878 288 aaKnown RBP20.73■□□□□ 0.91
VPS53-210ENST00000571456 UGP2Q16851 508 aa20.73■□□□□ 0.91
VPS53-210ENST00000571456 ZNF423Q2M1K9 1284 aa20.73■□□□□ 0.91
VPS53-210ENST00000571456 P3H1Q32P28 736 aa20.73■□□□□ 0.91
VPS53-210ENST00000571456 ARMC12Q5T9G4 340 aa20.73■□□□□ 0.91
VPS53-210ENST00000571456 ERAP2Q6P179 960 aa20.73■□□□□ 0.91
VPS53-210ENST00000571456 PARS2Q7L3T8 475 aaKnown RBP20.73■□□□□ 0.91
VPS53-210ENST00000571456 RAB44Q7Z6P3 723 aaPredicted RBP20.73■□□□□ 0.91
VPS53-210ENST00000571456 CAMK1DQ8IU85 385 aa20.73■□□□□ 0.91
VPS53-210ENST00000571456 ZNF567Q8N184 647 aa20.73■□□□□ 0.91
VPS53-210ENST00000571456 GOLGA6AQ9NYA3 693 aa20.73■□□□□ 0.91
VPS53-210ENST00000571456 PHTF1Q9UMS5 762 aa20.73■□□□□ 0.91
VPS53-210ENST00000571456 PLXNB3Q9ULL4 1909 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 NUMA1Q14980 2115 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 PIGNO95427 931 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 BCKDHBP21953 392 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 GKP32189 559 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 ACSL1P33121 698 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 PAFAH1B1P43034 410 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 CCR5P51681 352 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 DSC2Q02487 901 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 MPP3Q13368 585 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 PRPSAP1Q14558 356 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 CYP1B1Q16678 543 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 ANKRD20A2Q5SQ80 823 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 SYCP2LQ5T4T6 812 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 ANKRD20A1Q5TYW2 823 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 ANKRD20A3Q5VUR7 823 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 KIAA1161Q6NSJ0 714 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 TTC7BQ86TV6 843 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 OR14C36Q8NHC7 312 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 COG1Q8WTW3 980 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 LRRN4Q8WUT4 740 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 HNRNPLLQ8WVV9 542 aaKnown RBP20.72■□□□□ 0.91
VPS53-210ENST00000571456 SRPK1Q96SB4 655 aaKnown RBP20.72■□□□□ 0.91
VPS53-210ENST00000571456 TDRD1Q9BXT4 1180 aaKnown RBP20.72■□□□□ 0.91
VPS53-210ENST00000571456 ADGRE3Q9BY15 652 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 GBA3Q9H227 469 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.72■□□□□ 0.91
VPS53-210ENST00000571456 SERGEFQ9UGK8 458 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 MBD1Q9UIS9 605 aaPredicted RBP20.72■□□□□ 0.91
VPS53-210ENST00000571456 AAR2Q9Y312 384 aaKnown RBP20.72■□□□□ 0.91
VPS53-210ENST00000571456 RAI2Q9Y5P3 530 aa20.72■□□□□ 0.91
VPS53-210ENST00000571456 TENM4Q6N022 2769 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 PGLSO95336 258 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 EPOP01588 193 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 ENGP17813 658 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 HOXD12P35452 270 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 WDR45BQ5MNZ6 344 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 RABEPKQ7Z6M1 372 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 ADAT2Q7Z6V5 191 aaKnown RBP20.71■□□□□ 0.91
VPS53-210ENST00000571456 FAM124AQ86V42 546 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 TRIM69Q86WT6 500 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 C17orf53Q8N3J3 647 aaPredicted RBP20.71■□□□□ 0.91
VPS53-210ENST00000571456 C1orf54Q8WWF1 131 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 TADA1Q96BN2 335 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 FEM1CQ96JP0 617 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 RUNDC3BQ96NL0 473 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 TMEM121Q9BTD3 319 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 GPR174Q9BXC1 333 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 CCDC86Q9H6F5 360 aaKnown RBP20.71■□□□□ 0.91
VPS53-210ENST00000571456 FAM153AQ9UHL3 310 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 RSPH14Q9UHP6 348 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 PPIL1Q9Y3C6 166 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 PCDHGC4Q9Y5F7 938 aa20.71■□□□□ 0.91
VPS53-210ENST00000571456 TRPM6Q9BX84 2022 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 METTL12A8MUP2 240 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 C10orf142B7Z368 130 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 AREL1O15033 823 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 FZD6O60353 706 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 CPP00450 1065 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 CD86P42081 329 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 GEMP55040 296 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 SKOR1P84550 965 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 NIPAL4Q0D2K0 466 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 TRAF2Q12933 501 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 PARP6Q2NL67 630 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 CCDC70Q6NSX1 233 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 SYT10Q6XYQ8 523 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 ARHGEF18Q6ZSZ5 1173 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 RAVER1Q8IY67 606 aaKnown RBP20.7■□□□□ 0.9
VPS53-210ENST00000571456 CCDC89Q8N998 374 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 FAM71DQ8N9W8 422 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 ATL2Q8NHH9 583 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 ATG4AQ8WYN0 398 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 FAM118BQ9BPY3 351 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 CEP41Q9BYV8 373 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 PCDH9Q9HC56 1237 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 KCTD5Q9NXV2 234 aa20.7■□□□□ 0.9
VPS53-210ENST00000571456 PCDHB9Q9Y5E1 797 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms