RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 ATPAF2Q8N5M1 289 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 ALG3Q92685 438 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 FAF2Q96CS3 445 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 ZNF670Q9BS34 389 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 DPH1Q9BZG8 443 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 CEP44Q9C0F1 390 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 KCNF1Q9H3M0 494 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 SGK2Q9HBY8 427 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 NT5MQ9NPB1 228 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 DTLQ9NZJ0 730 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 GUCA1BQ9UMX6 200 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 NCKAP1Q9Y2A7 1128 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 TTLL3Q9Y4R7 772 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 ANKRD36A6QL64 1941 aa14.02□□□□□ -0.17
CLN3-235ENST00000568497 AHCTF1Q8WYP5 2266 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 A0A0A6YYK5 440 aaPredicted RBP14.01□□□□□ -0.17
CLN3-235ENST00000568497 GOLGA6L6A8MZA4 724 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 C1QTNF3-AMACRE9PGA6 284 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 KCNK1O00180 336 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 USP12O75317 370 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 GP1BBP13224 206 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 MYF5P13349 255 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 HTR7P34969 479 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 SCNN1BP51168 640 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 HADHBP55084 474 aaKnown RBP14.01□□□□□ -0.17
CLN3-235ENST00000568497 GSDMDP57764 484 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 ERVPABLB-1P60509 514 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 IL10RBQ08334 325 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 SLC20A2Q08357 652 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 BNIP3Q12983 259 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 LBRQ14739 615 aaKnown RBP14.01□□□□□ -0.17
CLN3-235ENST00000568497 PAFAH1B3Q15102 231 aaKnown RBP14.01□□□□□ -0.17
CLN3-235ENST00000568497 PDK2Q15119 407 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 KIAA0895LQ68EN5 471 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 CCDC50Q8IVM0 306 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 LRRC57Q8N9N7 239 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 GDAP1L1Q96MZ0 367 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 CINPQ9BW66 212 aaPredicted RBP14.01□□□□□ -0.17
CLN3-235ENST00000568497 FBRSQ9HAH7 460 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 LZTFL1Q9NQ48 299 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 THSD1Q9NS62 852 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 SEPT10Q9P0V9 454 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 ZFR2Q9UPR6 939 aaKnown RBP14.01□□□□□ -0.17
CLN3-235ENST00000568497 TEX15Q9BXT5 2789 aa14.01□□□□□ -0.17
CLN3-235ENST00000568497 A0A1W2PPC4 97 aa14□□□□□ -0.17
CLN3-235ENST00000568497 C16orf96A6NNT2 1141 aa14□□□□□ -0.17
CLN3-235ENST00000568497 K7ENP7 123 aa14□□□□□ -0.17
CLN3-235ENST00000568497 APOL1O14791 398 aa14□□□□□ -0.17
CLN3-235ENST00000568497 SLC31A1O15431 190 aa14□□□□□ -0.17
CLN3-235ENST00000568497 RNGTTO60942 597 aaKnown RBP14□□□□□ -0.17
CLN3-235ENST00000568497 DXOO77932 396 aaKnown RBP14□□□□□ -0.17
CLN3-235ENST00000568497 IGSF6O95976 241 aa14□□□□□ -0.17
CLN3-235ENST00000568497 GSRP00390 522 aa14□□□□□ -0.17
CLN3-235ENST00000568497 WNT1P04628 370 aa14□□□□□ -0.17
CLN3-235ENST00000568497 TIMP2P16035 220 aa14□□□□□ -0.17
CLN3-235ENST00000568497 CD38P28907 300 aa14□□□□□ -0.17
CLN3-235ENST00000568497 CDKN2BP42772 138 aa14□□□□□ -0.17
CLN3-235ENST00000568497 SLC1A1P43005 524 aa14□□□□□ -0.17
CLN3-235ENST00000568497 SNRPD1P62314 119 aaKnown RBP14□□□□□ -0.17
CLN3-235ENST00000568497 DAB2P98082 770 aa14□□□□□ -0.17
CLN3-235ENST00000568497 E2F1Q01094 437 aa14□□□□□ -0.17
CLN3-235ENST00000568497 DSC2Q02487 901 aa14□□□□□ -0.17
CLN3-235ENST00000568497 GALNT2Q10471 571 aa14□□□□□ -0.17
CLN3-235ENST00000568497 ZBTB17Q13105 803 aa14□□□□□ -0.17
CLN3-235ENST00000568497 FGL2Q14314 439 aa14□□□□□ -0.17
CLN3-235ENST00000568497 C11orf63Q6NUN7 778 aa14□□□□□ -0.17
CLN3-235ENST00000568497 INO80CQ6PI98 192 aaPredicted RBP14□□□□□ -0.17
CLN3-235ENST00000568497 GDPD4Q6W3E5 623 aa14□□□□□ -0.17
CLN3-235ENST00000568497 CCDC81Q6ZN84 652 aa14□□□□□ -0.17
CLN3-235ENST00000568497 ERN2Q76MJ5 926 aaKnown RBP14□□□□□ -0.17
CLN3-235ENST00000568497 SRLQ86TD4 932 aa14□□□□□ -0.17
CLN3-235ENST00000568497 CCNYQ8ND76 341 aa14□□□□□ -0.17
CLN3-235ENST00000568497 TRAF3IP1Q8TDR0 691 aaPredicted RBP14□□□□□ -0.17
CLN3-235ENST00000568497 DEPDC7Q96QD5 511 aa14□□□□□ -0.17
CLN3-235ENST00000568497 WRAP53Q9BUR4 548 aaKnown RBP14□□□□□ -0.17
CLN3-235ENST00000568497 BRD8Q9H0E9 1235 aa14□□□□□ -0.17
CLN3-235ENST00000568497 SSUH2Q9Y2M2 353 aa14□□□□□ -0.17
CLN3-235ENST00000568497 COQ6Q9Y2Z9 468 aa14□□□□□ -0.17
CLN3-235ENST00000568497 FARP1Q9Y4F1 1045 aaPredicted RBP14□□□□□ -0.17
CLN3-235ENST00000568497 MYO9AB2RTY4 2548 aa14□□□□□ -0.17
CLN3-235ENST00000568497 UBR5O95071 2799 aaPredicted RBP13.99□□□□□ -0.17
CLN3-235ENST00000568497 TRPM6Q9BX84 2022 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 A0A1W2PQU0 124 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 TCRBV7S2A1N4TA0A589 114 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 RAD51BO15315 384 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 CST8O60676 142 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 PCDH8O95206 1070 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 JCHAINP01591 159 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 PRNPP04156 253 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 HLA-DQB2P05538 268 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 ADRB3P13945 408 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 ACP1P24666 158 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 GARSP41250 739 aaKnown RBP13.99□□□□□ -0.17
CLN3-235ENST00000568497 CLDN2P57739 230 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 ITKQ08881 620 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 KIF5AQ12840 1032 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 ZNF235Q14590 738 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 ODF2Q5BJF6 829 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 TMCO4Q5TGY1 634 aa13.99□□□□□ -0.17
CLN3-235ENST00000568497 FAM46CQ5VWP2 391 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms