RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TMEM139Q8IV31 216 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 EID2Q8N6I1 236 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 SPC24Q8NBT2 197 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 PDCD6IPQ8WUM4 868 aaKnown RBP15.12■□□□□ 0.01
VPS39-210ENST00000568357 SPOCK2Q92563 424 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 LGMNQ99538 433 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 SEMA3CQ99985 751 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 ASH1LQ9NR48 2969 aaKnown RBP15.12■□□□□ 0.01
VPS39-210ENST00000568357 UCKL1Q9NWZ5 548 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 DDX56Q9NY93 547 aaKnown RBP15.12■□□□□ 0.01
VPS39-210ENST00000568357 KLF15Q9UIH9 416 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 HEY1Q9Y5J3 304 aa15.12■□□□□ 0.01
VPS39-210ENST00000568357 TNFSF14O43557 240 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 CDC25BP30305 580 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 CDKN2BP42772 138 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 PDE1CQ14123 709 aaPredicted RBP15.11■□□□□ 0.01
VPS39-210ENST00000568357 LRRC14Q15048 493 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 PTPRRQ15256 657 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 LLGL1Q15334 1064 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 WSCD2Q2TBF2 565 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 RALGPS1Q5JS13 557 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 NPNTQ6UXI9 565 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 LIPIQ6XZB0 460 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 CCDC13Q8IYE1 715 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 CHCHD4Q8N4Q1 142 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.11■□□□□ 0.01
VPS39-210ENST00000568357 PAF1Q8N7H5 531 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 CCNYQ8ND76 341 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 ACRBPQ8NEB7 543 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 TPCN2Q8NHX9 752 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 ARRDC2Q8TBH0 407 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.11■□□□□ 0.01
VPS39-210ENST00000568357 HDAC11Q96DB2 347 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 BAG1Q99933 345 aaPredicted RBP15.11■□□□□ 0.01
VPS39-210ENST00000568357 LACRTQ9GZZ8 138 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 LUC7LQ9NQ29 371 aaKnown RBP15.11■□□□□ 0.01
VPS39-210ENST00000568357 RAI2Q9Y5P3 530 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 TMEM131Q92545 1883 aa15.11■□□□□ 0.01
VPS39-210ENST00000568357 CFAP69A5D8W1 941 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 GOLGA8CPA6NN73 597 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 KCNK1O00180 336 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 TRIM38O00635 465 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 APOL1O14791 398 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 PSTPIP1O43586 416 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 LZTS3O60299 673 aaPredicted RBP15.1■□□□□ 0.01
VPS39-210ENST00000568357 SOCS5O75159 536 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 DKK1O94907 266 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 PGLSO95336 258 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 JCHAINP01591 159 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 HLA-DQB2P05538 268 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 PDHA1P08559 390 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 KRT10P13645 584 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 GM2AP17900 193 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 DGKAP23743 735 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 MARCKSL1P49006 195 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 DSC2Q02487 901 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 ADCY2Q08462 1091 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 PPIDQ08752 370 aaKnown RBP15.1■□□□□ 0.01
VPS39-210ENST00000568357 NIPAL4Q0D2K0 466 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 EIF2B5Q13144 721 aaKnown RBP15.1■□□□□ 0.01
VPS39-210ENST00000568357 AGERQ15109 404 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 IRF4Q15306 451 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 INAVAQ3KP66 663 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 ALG1LQ6GMV1 187 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 C11orf63Q6NUN7 778 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 B4GALNT4Q76KP1 1039 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 DPPA4Q7L190 304 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 RAB44Q7Z6P3 723 aaPredicted RBP15.1■□□□□ 0.01
VPS39-210ENST00000568357 RFX6Q8HWS3 928 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 PIH1D2Q8WWB5 315 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 ADAMTS14Q8WXS8 1223 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 IFT43Q96FT9 208 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 OLFM3Q96PB7 478 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 C1QTNF7Q9BXJ2 289 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 POLR1EQ9GZS1 481 aaKnown RBP15.1■□□□□ 0.01
VPS39-210ENST00000568357 DNAJC28Q9NX36 388 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 IMPACTQ9P2X3 320 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 SAE1Q9UBE0 346 aaPredicted RBP15.1■□□□□ 0.01
VPS39-210ENST00000568357 B4GALT6Q9UBX8 382 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 FTSJ1Q9UET6 329 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 PNMA8BQ9ULN7 279 aaPredicted RBP15.1■□□□□ 0.01
VPS39-210ENST00000568357 PHTF1Q9UMS5 762 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 APOBEC2Q9Y235 224 aaKnown RBP15.1■□□□□ 0.01
VPS39-210ENST00000568357 CABIN1Q9Y6J0 2220 aa15.1■□□□□ 0.01
VPS39-210ENST00000568357 TRPM6Q9BX84 2022 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 FLNBO75369 2602 aaKnown RBP15.09■□□□□ 0.01
VPS39-210ENST00000568357 A0A1W2PQ67 120 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 FZD6O60353 706 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 PIAS2O75928 621 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 RECQL5O94762 991 aaPredicted RBP15.09■□□□□ 0.01
VPS39-210ENST00000568357 TRIM16O95361 564 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 LDOC1O95751 146 aaPredicted RBP15.09■□□□□ 0.01
VPS39-210ENST00000568357 CPP00450 1065 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 CSF2P04141 144 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 GIMD1P0DJR0 217 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 CES1P23141 567 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 YPEL5P62699 121 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 DYNLT1P63172 113 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 INPP5AQ14642 412 aa15.09■□□□□ 0.01
VPS39-210ENST00000568357 ODF2Q5BJF6 829 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms