RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 HNRNPH1P31943 449 aaKnown RBP2.91□□□□□ -1.94
VPS35-207ENST00000568191 RYKP34925 604 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 GNL1P36915 607 aaPredicted RBP2.91□□□□□ -1.94
VPS35-207ENST00000568191 CDKN1AP38936 164 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 ARL4CP56559 192 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 ZBTB17Q13105 803 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 RBM39Q14498 530 aaKnown RBP2.91□□□□□ -1.94
VPS35-207ENST00000568191 CTF1Q16619 201 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 KRT24Q2M2I5 525 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 KRTAP24-1Q3LI83 254 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 ZNF449Q6P9G9 518 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 ZNF771Q7L3S4 317 aaPredicted RBP2.91□□□□□ -1.94
VPS35-207ENST00000568191 SLC26A9Q7LBE3 791 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 ADGRG6Q86SQ4 1221 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 KIAA2013Q8IYS2 634 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 AGBL3Q8NEM8 1001 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 GRAPLQ8TC17 118 aaPredicted RBP2.91□□□□□ -1.94
VPS35-207ENST00000568191 USP13Q92995 863 aaPredicted RBP2.91□□□□□ -1.94
VPS35-207ENST00000568191 FBXL8Q96CD0 374 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 CDCA5Q96FF9 252 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 COG8Q96MW5 612 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 SLC32A1Q9H598 525 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 ZNF334Q9HCZ1 680 aaPredicted RBP2.91□□□□□ -1.94
VPS35-207ENST00000568191 PTPRHQ9HD43 1115 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 ABCF3Q9NUQ8 709 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 FAM118AQ9NWS6 357 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 CISD1Q9NZ45 108 aaKnown RBP2.91□□□□□ -1.94
VPS35-207ENST00000568191 RCOR1Q9UKL0 485 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 DDX52Q9Y2R4 599 aaKnown RBP eCLIP2.91□□□□□ -1.94
VPS35-207ENST00000568191 NFE2L3Q9Y4A8 694 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 CGNL1Q0VF96 1302 aa2.91□□□□□ -1.94
VPS35-207ENST00000568191 GOLGA6L9A6NEM1 432 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 KLK10O43240 276 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 KRT10P13645 584 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 DDX5P17844 614 aaKnown RBP2.9□□□□□ -1.95
VPS35-207ENST00000568191 USP8P40818 1118 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 GRK6P43250 576 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 FMO5P49326 533 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 VEGFCP49767 419 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 EEF1A1P68104 462 aaKnown RBP2.9□□□□□ -1.95
VPS35-207ENST00000568191 SLC12A1Q13621 1099 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 EFR3AQ14156 821 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 TAF11Q15544 211 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 HIST2H2ACQ16777 129 aaPredicted RBP2.9□□□□□ -1.95
VPS35-207ENST00000568191 SERTAD4-AS1Q5TG53 156 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 EEF1A1P5Q5VTE0 462 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 PLEKHA7Q6IQ23 1121 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 TRNP1Q6NT89 227 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 WDR73Q6P4I2 378 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 MEX3BQ6ZN04 569 aaKnown RBP2.9□□□□□ -1.95
VPS35-207ENST00000568191 FAM160B2Q86V87 743 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 ZCCHC9Q8N567 271 aaKnown RBP2.9□□□□□ -1.95
VPS35-207ENST00000568191 C11orf65Q8NCR3 313 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 LNX1Q8TBB1 728 aaPredicted RBP2.9□□□□□ -1.95
VPS35-207ENST00000568191 PPM1EQ8WY54 764 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 CSF3RQ99062 836 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 ARPC5LQ9BPX5 153 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 MXRA8Q9BRK3 442 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP2.9□□□□□ -1.95
VPS35-207ENST00000568191 MROH8Q9H579 483 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 PCDH9Q9HC56 1237 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 MCM9Q9NXL9 1143 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 A3GALT2U3KPV4 340 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 ADGRF5Q8IZF2 1346 aa2.9□□□□□ -1.95
VPS35-207ENST00000568191 VWA3AA6NCI4 1184 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 LILRA5A6NI73 299 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 TTC36A6NLP5 189 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 HSPB2A8KAH6 182 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 NTN3O00634 580 aaPredicted RBP2.89□□□□□ -1.95
VPS35-207ENST00000568191 SOCS6O14544 535 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 CNPP09543 421 aaKnown RBP2.89□□□□□ -1.95
VPS35-207ENST00000568191 TMPOP42166 694 aaKnown RBP2.89□□□□□ -1.95
VPS35-207ENST00000568191 SEC61BP60468 96 aaKnown RBP2.89□□□□□ -1.95
VPS35-207ENST00000568191 ERVK11-1P61568 191 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 HSPB2Q16082 182 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 TCTN1Q2MV58 587 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 ANO1Q5XXA6 986 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 MOB3CQ70IA8 216 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 RRM2BQ7LG56 351 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 TADA2BQ86TJ2 420 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 GPAT4Q86UL3 456 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 ZNF441Q8N8Z8 693 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 CNBD1Q8NA66 436 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 IL17RCQ8NAC3 791 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 SNAPC3Q92966 411 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 ERGIC1Q969X5 290 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 SH3GL2Q99962 352 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 PYM1Q9BRP8 204 aaKnown RBP2.89□□□□□ -1.95
VPS35-207ENST00000568191 BPIFA1Q9NP55 256 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 NOX4Q9NPH5 578 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 CNGB3Q9NQW8 809 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 PEMTQ9UBM1 199 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 FEM1BQ9UK73 627 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 FAM96BQ9Y3D0 163 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 RIPOR2Q9Y4F9 1068 aa2.89□□□□□ -1.95
VPS35-207ENST00000568191 GOLGA6L10A0A0M3HER8 536 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 A0A0U1RQF3 1178 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 ASPDHA6ND91 283 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 DVL1O14640 695 aa2.88□□□□□ -1.95
VPS35-207ENST00000568191 CAPN9O14815 690 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms