RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 HSD11B1LQ7Z5J1 315 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 SYCE1Q8N0S2 351 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 OR13H1Q8NG92 308 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 PTCD2Q8WV60 388 aaKnown RBP9.27□□□□□ -0.93
VPS35-206ENST00000565228 TFB1MQ8WVM0 346 aaKnown RBP9.27□□□□□ -0.93
VPS35-206ENST00000565228 P3H4Q92791 437 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 MS4A14Q96JA4 679 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 SERAC1Q96JX3 654 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 CALR3Q96L12 384 aaKnown RBP9.27□□□□□ -0.93
VPS35-206ENST00000565228 MRGPRX2Q96LB1 330 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 MCCC1Q96RQ3 725 aaPredicted RBP9.27□□□□□ -0.93
VPS35-206ENST00000565228 WDR24Q96S15 920 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 SLC17A9Q9BYT1 436 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 POLR1EQ9GZS1 481 aaKnown RBP9.27□□□□□ -0.93
VPS35-206ENST00000565228 KDM4CQ9H3R0 1056 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 ATP13A3Q9H7F0 1226 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 GLOD4Q9HC38 313 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.27□□□□□ -0.93
VPS35-206ENST00000565228 KLF15Q9UIH9 416 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 DNPEPQ9ULA0 475 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 SLC6A14Q9UN76 642 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 TTLL3Q9Y4R7 772 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 SPO11Q9Y5K1 396 aa9.27□□□□□ -0.93
VPS35-206ENST00000565228 ATRXP46100 2492 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 MED19A0JLT2 244 aaPredicted RBP9.26□□□□□ -0.93
VPS35-206ENST00000565228 C4orf47A7E2U8 309 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 AURKAO14965 403 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 KHNYNO15037 678 aaKnown RBP9.26□□□□□ -0.93
VPS35-206ENST00000565228 SOCS5O75159 536 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 METTL18O95568 372 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 SOD1P00441 154 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 CPP00450 1065 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 ATXN1LP0C7T5 689 aaKnown RBP9.26□□□□□ -0.93
VPS35-206ENST00000565228 PIRTP0C851 137 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 RBP3P10745 1247 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 C6P13671 934 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 CD59P13987 128 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 SERPINA4P29622 427 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 HNF1BP35680 557 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 MAPK8P45983 427 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 ID4P47928 161 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 LIG3P49916 1009 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 EIF3EP60228 445 aaKnown RBP9.26□□□□□ -0.93
VPS35-206ENST00000565228 RACK1P63244 317 aaKnown RBP9.26□□□□□ -0.93
VPS35-206ENST00000565228 FAM193AP78312 1265 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 IL9RQ01113 521 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 PTSQ03393 145 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 ITKQ08881 620 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 GALNT3Q14435 633 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 IRF4Q15306 451 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 OASLQ15646 514 aaKnown RBP9.26□□□□□ -0.93
VPS35-206ENST00000565228 HLA-BQ31612 363 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 STPG1Q5TH74 334 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 NAPEPLDQ6IQ20 393 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 NEK5Q6P3R8 708 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 BRAT1Q6PJG6 821 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 CRTC1Q6UUV9 634 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 DPPA4Q7L190 304 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 KANSL1Q7Z3B3 1105 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 KDELC2Q7Z4H8 507 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 ABI3BPQ7Z7G0 1075 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 SLC13A5Q86YT5 568 aaPredicted RBP9.26□□□□□ -0.93
VPS35-206ENST00000565228 KLHDC8BQ8IXV7 354 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 CCDC110Q8TBZ0 833 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 HCAR2Q8TDS4 363 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 COG1Q8WTW3 980 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 PDCD6IPQ8WUM4 868 aaKnown RBP9.26□□□□□ -0.93
VPS35-206ENST00000565228 C1orf54Q8WWF1 131 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 HTR3CQ8WXA8 447 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 PPP1R16AQ96I34 528 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 COQ10AQ96MF6 247 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 CAMK1GQ96NX5 476 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 PHF12Q96QT6 1004 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 AGAP2Q99490 1192 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 EDEM2Q9BV94 578 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 SLC25A51Q9H1U9 297 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 TCEAL2Q9H3H9 227 aaPredicted RBP9.26□□□□□ -0.93
VPS35-206ENST00000565228 DYRK4Q9NR20 520 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 DLL3Q9NYJ7 618 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 ANKRD6Q9Y2G4 727 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.26□□□□□ -0.93
VPS35-206ENST00000565228 PLXNB3Q9ULL4 1909 aa9.26□□□□□ -0.93
VPS35-206ENST00000565228 ANKRD11Q6UB99 2663 aaPredicted RBP9.25□□□□□ -0.93
VPS35-206ENST00000565228 A0A0J9YYE9 177 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 H7C0C1 242 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 GIPC1O14908 333 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 PPP1R12AO14974 1030 aaPredicted RBP9.25□□□□□ -0.93
VPS35-206ENST00000565228 VILLO15195 856 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 ZNF185O15231 689 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 TSPAN6O43657 245 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 HEXIM1O94992 359 aaKnown RBP9.25□□□□□ -0.93
VPS35-206ENST00000565228 CLDN7O95471 211 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 TRBC1P01850 177 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 FUCA1P04066 466 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 ZSCAN5DPP0CG00 497 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 GIMD1P0DJR0 217 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 PSMB4P28070 264 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 CD38P28907 300 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 HOXD12P35452 270 aa9.25□□□□□ -0.93
VPS35-206ENST00000565228 HSPA9P38646 679 aaKnown RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms