RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 CLHC1Q8NHS4 586 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 DQX1Q8TE96 717 aaKnown RBP5.2□□□□□ -1.58
VPS35-205ENST00000563984 NTN5Q8WTR8 489 aaPredicted RBP5.2□□□□□ -1.58
VPS35-205ENST00000563984 SCFD2Q8WU76 684 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 MAIP1Q8WWC4 291 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 DDX17Q92841 729 aaKnown RBP5.2□□□□□ -1.58
VPS35-205ENST00000563984 RFKQ969G6 155 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 SLC22A18Q96BI1 424 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 CHMP6Q96FZ7 201 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 LRIG1Q96JA1 1093 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 FAM20AQ96MK3 541 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 DACH2Q96NX9 599 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 BBC3Q96PG8 261 aaPredicted RBP5.2□□□□□ -1.58
VPS35-205ENST00000563984 CDRT15Q96T59 188 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 SHCBP1LQ9BZQ2 653 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 KRT23Q9C075 422 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 KLHL4Q9C0H6 718 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 NDEL1Q9GZM8 345 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 PRDM13Q9H4Q3 707 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 NEK6Q9HC98 313 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 SERINC1Q9NRX5 453 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 MRPL39Q9NYK5 338 aaKnown RBP5.2□□□□□ -1.58
VPS35-205ENST00000563984 TAS2R7Q9NYW3 318 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 SNX6Q9UNH7 406 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 STX8Q9UNK0 236 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 AURKCQ9UQB9 309 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 DERAQ9Y315 318 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 FHAD1B1AJZ9 1412 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 UHRF1BP1LA0JNW5 1464 aa5.2□□□□□ -1.58
VPS35-205ENST00000563984 PGPEP1LA6NFU8 196 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 ZNF785A8K8V0 405 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 SYCE1LA8MT33 242 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 BTBD19C9JJ37 291 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 F8W8V4 182 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 PSMA7O14818 248 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 CASC3O15234 703 aaKnown RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 IFNB1P01574 187 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 ERBB2P04626 1255 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 URODP06132 367 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 ADRB2P07550 413 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 PABPC4LP0CB38 370 aaKnown RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 POU2F1P14859 743 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 RHCEP18577 417 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 RXRAP19793 462 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 GALP22466 123 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 CRABP2P29373 138 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 RFC1P35251 1148 aaPredicted RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 LIFRP42702 1097 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 AARSP49588 968 aaKnown RBP eCLIP5.19□□□□□ -1.58
VPS35-205ENST00000563984 MAP2K6P52564 334 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 EEF1A1P68104 462 aaKnown RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 RHDQ02161 417 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 EEF1A2Q05639 463 aaKnown RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 SCRN3Q0VDG4 424 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 SMARCB1Q12824 385 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 RAPSNQ13702 412 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 BLMHQ13867 455 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 PTPRRQ15256 657 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 SMAD1Q15797 465 aaKnown RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 HSP90AA4PQ58FG1 418 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 TTMPQ5BVD1 217 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 FSCBQ5H9T9 825 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 AARS2Q5JTZ9 985 aaKnown RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 CLVS2Q5SYC1 327 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 EEF1A1P5Q5VTE0 462 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 IL23RQ5VWK5 629 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 FBXO42Q6P3S6 717 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 TTC23LQ6PF05 361 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 KDM7AQ6ZMT4 941 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 CATSPERGQ6ZRH7 1159 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 C3orf62Q6ZUJ4 267 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 USP50Q70EL3 339 aaPredicted RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 RD3Q7Z3Z2 195 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 TMTC1Q8IUR5 882 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 ARHGAP18Q8N392 663 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 TCAIMQ8N3R3 496 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 HUS1BQ8NHY5 278 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 SLC5A11Q8WWX8 675 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 SYN2Q92777 582 aaPredicted RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 CIDECQ96AQ7 238 aaPredicted RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 MVB12AQ96EY5 273 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 ZNF764Q96H86 408 aaPredicted RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 AK8Q96MA6 479 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 ZNF560Q96MR9 790 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 PRICKLE1Q96MT3 831 aaPredicted RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 LENG8Q96PV6 779 aaPredicted RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 ATP6V0BQ99437 205 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 SH3GL2Q99962 352 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 CITED2Q99967 270 aaPredicted RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 SPXQ9BT56 116 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 CNPPD1Q9BV87 410 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 C1orf43Q9BWL3 253 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 PINK1Q9BXM7 581 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 IFIH1Q9BYX4 1025 aaKnown RBP5.19□□□□□ -1.58
VPS35-205ENST00000563984 TTYH3Q9C0H2 523 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 ABCG8Q9H221 673 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 SLC12A5Q9H2X9 1139 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 TPK1Q9H3S4 243 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 R3HDMLQ9H3Y0 253 aa5.19□□□□□ -1.58
VPS35-205ENST00000563984 SARS2Q9NP81 518 aaKnown RBP5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms