RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 HELZ2Q9BYK8 2649 aaKnown RBP15.84■□□□□ 0.13
CLK3-211ENST00000563297 ATMQ13315 3056 aa15.83■□□□□ 0.13
CLK3-211ENST00000563297 CDRT15L2A8MXV6 281 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 RECQL5O94762 991 aaPredicted RBP15.83■□□□□ 0.12
CLK3-211ENST00000563297 TNFP01375 233 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 FTLP02792 175 aaPredicted RBP15.83■□□□□ 0.12
CLK3-211ENST00000563297 PCCBP05166 539 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 GZMAP12544 262 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 SERPINA4P29622 427 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 ANP32AP39687 249 aaKnown RBP15.83■□□□□ 0.12
CLK3-211ENST00000563297 HCAR3P49019 387 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 UCNP55089 124 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 TMPRSS3P57727 454 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 TYRO3Q06418 890 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 BCL2L1Q07817 233 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 IL10RBQ08334 325 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 MTM1Q13496 603 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 SPIDRQ14159 915 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 RFTN1Q14699 578 aaPredicted RBP15.83■□□□□ 0.12
CLK3-211ENST00000563297 PPP6R3Q5H9R7 873 aaPredicted RBP15.83■□□□□ 0.12
CLK3-211ENST00000563297 CCDC183Q5T5S1 534 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 ARHGAP40Q5TG30 622 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 GKN2Q86XP6 184 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 PSTKQ8IV42 348 aaKnown RBP15.83■□□□□ 0.12
CLK3-211ENST00000563297 TP53INP2Q8IXH6 220 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 NPWQ8N729 165 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 KYQ8NBH2 561 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 WDR36Q8NI36 951 aaKnown RBP15.83■□□□□ 0.12
CLK3-211ENST00000563297 FNIP1Q8TF40 1166 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 WDR92Q96MX6 357 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 CINPQ9BW66 212 aaPredicted RBP15.83■□□□□ 0.12
CLK3-211ENST00000563297 SP110Q9HB58 689 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 AIPL1Q9NZN9 384 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 CWC15Q9P013 229 aaKnown RBP15.83■□□□□ 0.12
CLK3-211ENST00000563297 KLQ9UEF7 1012 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 GPR34Q9UPC5 381 aa15.83■□□□□ 0.12
CLK3-211ENST00000563297 CCDC187A0A096LP49 1063 aa15.82■□□□□ 0.12
CLK3-211ENST00000563297 TMEM202A6NGA9 273 aa15.82■□□□□ 0.12
CLK3-211ENST00000563297 DFFAO00273 331 aa15.82■□□□□ 0.12
CLK3-211ENST00000563297 DDX3XO00571 662 aaKnown RBP eCLIP15.82■□□□□ 0.12
CLK3-211ENST00000563297 TRAFD1O14545 582 aaPredicted RBP15.82■□□□□ 0.12
CLK3-211ENST00000563297 PRPSAP2O60256 369 aa15.82■□□□□ 0.12
CLK3-211ENST00000563297 TNFSF15O95150 251 aa15.82■□□□□ 0.12
CLK3-211ENST00000563297 GM2AP17900 193 aa15.82■□□□□ 0.12
CLK3-211ENST00000563297 SCNN1BP51168 640 aa15.82■□□□□ 0.12
CLK3-211ENST00000563297 POLR2LP62875 67 aaKnown RBP15.82■□□□□ 0.12
CLK3-211ENST00000563297 CCL7P80098 99 aa15.82■□□□□ 0.12
CLK3-211ENST00000563297 ASIC2Q16515 512 aa15.82■□□□□ 0.12
CLK3-211ENST00000563297 E4F1Q66K89 784 aaPredicted RBP15.82■□□□□ 0.12
CLK3-211ENST00000563297 FOXR1Q6PIV2 292 aa15.82■□□□□ 0.12
CLK3-211ENST00000563297 ATL2Q8NHH9 583 aa15.82■□□□□ 0.12
CLK3-211ENST00000563297 FUBP1Q96AE4 644 aaKnown RBP15.82■□□□□ 0.12
CLK3-211ENST00000563297 CCDC74AQ96AQ1 378 aa15.82■□□□□ 0.12
CLK3-211ENST00000563297 RBM15Q96T37 977 aaKnown RBP eCLIP15.82■□□□□ 0.128e-7■■■□□ 18.1
CLK3-211ENST00000563297 SYNDIG1Q9H7V2 258 aa15.82■□□□□ 0.12
CLK3-211ENST00000563297 CNOT8Q9UFF9 292 aaKnown RBP15.82■□□□□ 0.12
CLK3-211ENST00000563297 DGKBQ9Y6T7 804 aa15.82■□□□□ 0.12
CLK3-211ENST00000563297 AHCTF1Q8WYP5 2266 aa15.82■□□□□ 0.12
CLK3-211ENST00000563297 A0A1W2PQM1 296 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 A8MX80 341 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 GOLGA6L22H0YM25 854 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 LRCH4O75427 683 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 HOXC4P09017 264 aaPredicted RBP15.81■□□□□ 0.12
CLK3-211ENST00000563297 TRIM23P36406 574 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 PRKCIP41743 596 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 ZNF135P52742 658 aaPredicted RBP15.81■□□□□ 0.12
CLK3-211ENST00000563297 KIAA1024LP59773 190 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 SLC10A7Q0GE19 358 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 DPYSQ14117 519 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 ANO6Q4KMQ2 910 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 OGFOD3Q6PK18 319 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 DPPA4Q7L190 304 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 B3GNT8Q7Z7M8 397 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 CLEC14AQ86T13 490 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 ZNF843Q8N446 348 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 ARL14Q8N4G2 192 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 GPR156Q8NFN8 814 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 OR56A4Q8NGH8 313 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 SNRNP27Q8WVK2 155 aaKnown RBP15.81■□□□□ 0.12
CLK3-211ENST00000563297 OR1E3Q8WZA6 343 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 PDXPQ96GD0 296 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 LIN37Q96GY3 246 aaPredicted RBP15.81■□□□□ 0.12
CLK3-211ENST00000563297 PSKH2Q96QS6 385 aa15.81■□□□□ 0.12
CLK3-211ENST00000563297 MRPL40Q9NQ50 206 aaKnown RBP15.81■□□□□ 0.12
CLK3-211ENST00000563297 COL6A6A6NMZ7 2263 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 TTC24A2A3L6 582 aaPredicted RBP15.8■□□□□ 0.12
CLK3-211ENST00000563297 ERVH48-1M5A8F1 160 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 CACNB4O00305 520 aaPredicted RBP15.8■□□□□ 0.12
CLK3-211ENST00000563297 MBD3O95983 291 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 ELFN1P0C7U0 828 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 MLLT3P42568 568 aaPredicted RBP15.8■□□□□ 0.12
CLK3-211ENST00000563297 RENBPP51606 427 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 RHDQ02161 417 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 VAC14Q08AM6 782 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 LBRQ14739 615 aaKnown RBP15.8■□□□□ 0.12
CLK3-211ENST00000563297 PNCKQ6P2M8 343 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 PELI3Q8N2H9 469 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 LZTR1Q8N653 840 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 PAF1Q8N7H5 531 aa15.8■□□□□ 0.12
CLK3-211ENST00000563297 OR6C4Q8NGE1 309 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms