RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 DFFAO00273 331 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 EEF2KO00418 725 aaKnown RBP13.06□□□□□ -0.32
SF3B3-202ENST00000562722 SLC28A2O43868 658 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 BUB1BO60566 1050 aaPredicted RBP13.06□□□□□ -0.32
SF3B3-202ENST00000562722 PRAMEF11O60813 436 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 ELFN1P0C7U0 828 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 KRT10P13645 584 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 KELP23276 732 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 PSMA2P25787 234 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 HTR7P34969 479 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 PAPOLAP51003 745 aaKnown RBP13.06□□□□□ -0.32
SF3B3-202ENST00000562722 NDST2P52849 883 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 UBXN1Q04323 297 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 BCL2L1Q07817 233 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 ARHGEF7Q14155 803 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 USP53Q70EK8 1073 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 PRICKLE2Q7Z3G6 844 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 SRLQ86TD4 932 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 ZSWIM9Q86XI8 627 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 PLA2G15Q8NCC3 412 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 TSEN2Q8NCE0 465 aaKnown RBP13.06□□□□□ -0.32
SF3B3-202ENST00000562722 OR56A4Q8NGH8 313 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 OR1E3Q8WZA6 343 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 RBM15Q96T37 977 aaKnown RBP eCLIP13.06□□□□□ -0.32
SF3B3-202ENST00000562722 ARHGAP9Q9BRR9 750 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 DPEP2Q9H4A9 486 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 DHX35Q9H5Z1 703 aaKnown RBP13.06□□□□□ -0.32
SF3B3-202ENST00000562722 LRRC19Q9H756 370 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 SUDS3Q9H7L9 328 aaPredicted RBP13.06□□□□□ -0.32
SF3B3-202ENST00000562722 MRPL40Q9NQ50 206 aaKnown RBP13.06□□□□□ -0.32
SF3B3-202ENST00000562722 AP4E1Q9UPM8 1137 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 SSUH2Q9Y2M2 353 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 PCDHGA7Q9Y5G6 932 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 CHD5Q8TDI0 1954 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 TMEM202A6NGA9 273 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 A8MX80 341 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 TMCO5BA8MYB1 307 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 RECQL5O94762 991 aaPredicted RBP13.05□□□□□ -0.32
SF3B3-202ENST00000562722 CCDC172P0C7W6 258 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 CDK11BP21127 795 aaKnown RBP13.05□□□□□ -0.32
SF3B3-202ENST00000562722 RGRP47804 291 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 KIAA1024LP59773 190 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 POLR2LP62875 67 aaKnown RBP13.05□□□□□ -0.32
SF3B3-202ENST00000562722 ACOX1Q15067 660 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 TGIF1Q15583 401 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 PHF19Q5T6S3 580 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 KCTD16Q68DU8 428 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 MCOLN2Q8IZK6 566 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 FUBP1Q96AE4 644 aaKnown RBP13.05□□□□□ -0.32
SF3B3-202ENST00000562722 SLC39A8Q9C0K1 460 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 WDR26Q9H7D7 661 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 CYP4F12Q9HCS2 524 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 FGF22Q9HCT0 170 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 SEPT10Q9P0V9 454 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 PCSK1NQ9UHG2 260 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 HEMK1Q9Y5R4 338 aaPredicted RBP13.05□□□□□ -0.32
SF3B3-202ENST00000562722 DGKBQ9Y6T7 804 aa13.05□□□□□ -0.32
SF3B3-202ENST00000562722 RP1P56715 2156 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 MGAQ8IWI9 3026 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 TCRBV5S1A1TA0A578 114 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 LGALS16A8MUM7 142 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 TEX33O43247 280 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 GLB1P16278 677 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 CCKBRP32239 447 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 CSNK1DP48730 415 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 SCNN1BP51168 640 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 MAPK10P53779 464 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 OGDHQ02218 1023 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 BIRC2Q13490 618 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 AGERQ15109 404 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 MAP9Q49MG5 647 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 C14orf28Q4W4Y0 310 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 PPP6R3Q5H9R7 873 aaPredicted RBP13.04□□□□□ -0.32
SF3B3-202ENST00000562722 PPP1R15BQ5SWA1 713 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 CERCAMQ5T4B2 595 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 ACAD10Q6JQN1 1059 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 RFX8Q6ZV50 586 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 SPRED1Q7Z699 444 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 GPR156Q8NFN8 814 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 CMKLR1Q99788 373 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 FAM117AQ9C073 453 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 TMEM168Q9H0V1 697 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 LRIT1Q9P2V4 623 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 APPL1Q9UKG1 709 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 PCDHB11Q9Y5F2 797 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 RNF215Q9Y6U7 377 aa13.04□□□□□ -0.32
SF3B3-202ENST00000562722 PRAMEF33A0A0G2JMD5 474 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 CFAP69A5D8W1 941 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 ATMINO43313 823 aaPredicted RBP13.03□□□□□ -0.32
SF3B3-202ENST00000562722 PRAMEF10O60809 474 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 LIPCP11150 499 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 FERP16591 822 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 ITIH1P19827 911 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 TNFAIP3P21580 790 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 MYL5Q02045 173 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 RALGDSQ12967 914 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 NFATC3Q12968 1075 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 CA9Q16790 459 aa13.03□□□□□ -0.32
SF3B3-202ENST00000562722 TSR1Q2NL82 804 aaKnown RBP13.03□□□□□ -0.32
SF3B3-202ENST00000562722 AMZ1Q400G9 498 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms