RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 ZNF567Q8N184 647 aa16.8■□□□□ 0.28
CLK3-207ENST00000562389 FAM174AQ8TBP5 190 aa16.8■□□□□ 0.28
CLK3-207ENST00000562389 SCRN2Q96FV2 425 aa16.8■□□□□ 0.28
CLK3-207ENST00000562389 MCCC1Q96RQ3 725 aaPredicted RBP16.8■□□□□ 0.28
CLK3-207ENST00000562389 RBM15Q96T37 977 aaKnown RBP eCLIP16.8■□□□□ 0.288e-7■■■□□ 18.1
CLK3-207ENST00000562389 KLF6Q99612 283 aaPredicted RBP16.8■□□□□ 0.28
CLK3-207ENST00000562389 FAM118BQ9BPY3 351 aa16.8■□□□□ 0.28
CLK3-207ENST00000562389 C1QTNF7Q9BXJ2 289 aa16.8■□□□□ 0.28
CLK3-207ENST00000562389 PCDH9Q9HC56 1237 aa16.8■□□□□ 0.28
CLK3-207ENST00000562389 TRMT1Q9NXH9 659 aaKnown RBP16.8■□□□□ 0.28
CLK3-207ENST00000562389 B4GALT6Q9UBX8 382 aa16.8■□□□□ 0.28
CLK3-207ENST00000562389 TRHDEQ9UKU6 1024 aa16.8■□□□□ 0.28
CLK3-207ENST00000562389 RPL26L1Q9UNX3 145 aaKnown RBP16.8■□□□□ 0.28
CLK3-207ENST00000562389 CHKBQ9Y259 395 aa16.8■□□□□ 0.28
CLK3-207ENST00000562389 JRKLQ9Y4A0 524 aa16.8■□□□□ 0.28
CLK3-207ENST00000562389 HS3ST3A1Q9Y663 406 aa16.8■□□□□ 0.28
CLK3-207ENST00000562389 RAD51BO15315 384 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 MAGEC1O60732 1142 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 CER1O95813 267 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 ELFN1P0C7U0 828 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 VIPR1P32241 457 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 CTSKP43235 329 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 LIG3P49916 1009 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 ATXN3P54252 364 aaPredicted RBP16.79■□□□□ 0.28
CLK3-207ENST00000562389 C21orf59P57076 290 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 KIF19Q2TAC6 998 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 STPG1Q5TH74 334 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 LIPIQ6XZB0 460 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 GCNT7Q6ZNI0 430 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 PID1Q7Z2X4 250 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 MINDY1Q8N5J2 469 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 SLC35B2Q8TB61 432 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 FCRL5Q96RD9 977 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 MYOCQ99972 504 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 GTPBP2Q9BX10 602 aaKnown RBP16.79■□□□□ 0.28
CLK3-207ENST00000562389 FRMD8P1Q9BZ68 369 aaPredicted RBP16.79■□□□□ 0.28
CLK3-207ENST00000562389 C10orf88Q9H8K7 445 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 PYCARDQ9ULZ3 195 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 CA5BQ9Y2D0 317 aa16.79■□□□□ 0.28
CLK3-207ENST00000562389 R3HDM2Q9Y2K5 976 aaKnown RBP16.79■□□□□ 0.28
CLK3-207ENST00000562389 ZNF292O60281 2723 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 A0A0J9YYE9 177 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 A6NNZ2 444 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 TLR4O00206 839 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 KCNN4O15554 427 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 KIF5CO60282 957 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 TRBC1P01850 177 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 NFKB1P19838 968 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 SDHBP21912 280 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 MSNP26038 577 aaKnown RBP16.78■□□□□ 0.28
CLK3-207ENST00000562389 EPHB1P54762 984 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 NXPH1P58417 271 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 SEMG2Q02383 582 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 ZNF569Q5MCW4 686 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 KYAT3Q6YP21 454 aaKnown RBP16.78■□□□□ 0.28
CLK3-207ENST00000562389 ABI3BPQ7Z7G0 1075 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 TP53I13Q8NBR0 393 aaPredicted RBP16.78■□□□□ 0.28
CLK3-207ENST00000562389 CENPTQ96BT3 561 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 USP29Q9HBJ7 922 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 DNAAF2Q9NVR5 837 aaKnown RBP16.78■□□□□ 0.28
CLK3-207ENST00000562389 CDV3Q9UKY7 258 aaKnown RBP16.78■□□□□ 0.28
CLK3-207ENST00000562389 DNPEPQ9ULA0 475 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 COQ6Q9Y2Z9 468 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 SNX11Q9Y5W9 270 aa16.78■□□□□ 0.28
CLK3-207ENST00000562389 CAPN8A6NHC0 703 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 NPIPB15A6NHN6 443 aaPredicted RBP16.77■□□□□ 0.28
CLK3-207ENST00000562389 USP27XA6NNY8 438 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 C4orf47A7E2U8 309 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 H0Y8X5 98 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 PSMD11O00231 422 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 FPGTO14772 594 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 SLC30A4O14863 429 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 LZTS3O60299 673 aaPredicted RBP16.77■□□□□ 0.28
CLK3-207ENST00000562389 STK10O94804 968 aaKnown RBP16.77■□□□□ 0.28
CLK3-207ENST00000562389 HEXIM1O94992 359 aaKnown RBP16.77■□□□□ 0.28
CLK3-207ENST00000562389 MT-CYBP00156 380 aaPredicted RBP16.77■□□□□ 0.28
CLK3-207ENST00000562389 CTPS1P17812 591 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 LHCGRP22888 699 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 CLDN2P57739 230 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 CNGA3Q16281 694 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 RSPO4Q2I0M5 234 aaPredicted RBP16.77■□□□□ 0.28
CLK3-207ENST00000562389 ZNF423Q2M1K9 1284 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 HLA-BQ31612 363 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 ITPRIPL1Q6GPH6 555 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 SLC35F6Q8N357 371 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 LPCAT1Q8NF37 534 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 SPATA22Q8NHS9 363 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 KLHDC7BQ96G42 594 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 BMFQ96LC9 184 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 SPATA13Q96N96 652 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 TRIB3Q96RU7 358 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 LYSMD1Q96S90 227 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 ADGRE3Q9BY15 652 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 GBA3Q9H227 469 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 GAREM1Q9H706 876 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 GPR27Q9NS67 375 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 FAM153AQ9UHL3 310 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 RSPH14Q9UHP6 348 aa16.77■□□□□ 0.28
CLK3-207ENST00000562389 FRYLO94915 3013 aa16.77■□□□□ 0.27
CLK3-207ENST00000562389 A8MX80 341 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms