RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 HNRNPH3P31942 346 aaKnown RBP10.34□□□□□ -0.75
CLK3-205ENST00000561673 SSR1P43307 286 aaKnown RBP10.34□□□□□ -0.75
CLK3-205ENST00000561673 ARSEP51690 589 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 HK3P52790 923 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 CDH6P55285 790 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 AP1S1P61966 158 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 RALGDSQ12967 914 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 MMRN1Q13201 1228 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 KRT81Q14533 505 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 ZNF235Q14590 738 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 NFATC4Q14934 902 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 NR0B2Q15466 257 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 ALG11Q2TAA5 492 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 COL28A1Q2UY09 1125 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 ATP13A4Q4VNC1 1196 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 GUSBP11Q6P575 273 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 ENPP7Q6UWV6 458 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 LIPIQ6XZB0 460 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 NYAP1Q6ZVC0 841 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 CPNE8Q86YQ8 564 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 HID1Q8IV36 788 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 PLA2G15Q8NCC3 412 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 ZNF564Q8TBZ8 553 aaPredicted RBP10.34□□□□□ -0.75
CLK3-205ENST00000561673 FAM71BQ8TC56 605 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 MAPK15Q8TD08 544 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 TBATAQ96M53 351 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 SCUBE2Q9NQ36 999 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 EVA1BQ9NVM1 165 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 NCKIPSDQ9NZQ3 722 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 PCDHB1Q9Y5F3 818 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 PCDHGC4Q9Y5F7 938 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.34□□□□□ -0.75
CLK3-205ENST00000561673 BPTFQ12830 3046 aa10.34□□□□□ -0.75
CLK3-205ENST00000561673 APC2O95996 2303 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.33□□□□□ -0.76
CLK3-205ENST00000561673 TLX3O43711 291 aaPredicted RBP10.33□□□□□ -0.76
CLK3-205ENST00000561673 BRINP1O60477 761 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 TPM3P06753 285 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 ANXA6P08133 673 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 ELFN1P0C7U0 828 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 TGM2P21980 687 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 HTR1BP28222 390 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 SERPINB6P35237 376 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 HSPA9P38646 679 aaKnown RBP10.33□□□□□ -0.76
CLK3-205ENST00000561673 BLKP51451 505 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 SRP54P61011 504 aaKnown RBP10.33□□□□□ -0.76
CLK3-205ENST00000561673 MAXP61244 160 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 MTM1Q13496 603 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 TCEA2Q15560 299 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 HADHQ16836 314 aaKnown RBP10.33□□□□□ -0.76
CLK3-205ENST00000561673 ASTE1Q2TB18 679 aaPredicted RBP10.33□□□□□ -0.76
CLK3-205ENST00000561673 C6orf132Q5T0Z8 1188 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 MARC1Q5VT66 337 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 KCTD16Q68DU8 428 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 DPPA4Q7L190 304 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 EFL1Q7Z2Z2 1120 aaKnown RBP10.33□□□□□ -0.76
CLK3-205ENST00000561673 RD3Q7Z3Z2 195 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 SLC35F3Q8IY50 421 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 ATPAF2Q8N5M1 289 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 PAF1Q8N7H5 531 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 FUBP1Q96AE4 644 aaKnown RBP10.33□□□□□ -0.76
CLK3-205ENST00000561673 DCBLD2Q96PD2 775 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 NUDCD1Q96RS6 583 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 MGME1Q9BQP7 344 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 PACSIN1Q9BY11 444 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 CTTNBP2NLQ9P2B4 639 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 RCOR3Q9P2K3 495 aaPredicted RBP10.33□□□□□ -0.76
CLK3-205ENST00000561673 KNTC1P50748 2209 aa10.33□□□□□ -0.76
CLK3-205ENST00000561673 TDRD6O60522 2096 aaKnown RBP10.32□□□□□ -0.76
CLK3-205ENST00000561673 FAM208BQ5VWN6 2430 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 TMEM202A6NGA9 273 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 CASC3O15234 703 aaKnown RBP10.32□□□□□ -0.76
CLK3-205ENST00000561673 SOCS5O75159 536 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 USP12O75317 370 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 CSO75390 466 aaKnown RBP10.32□□□□□ -0.76
CLK3-205ENST00000561673 PROSCO94903 275 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 RASGRP1O95267 797 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 H2AFZP0C0S5 128 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 CTSEP14091 401 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 TRIM23P36406 574 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 EIF2S3P41091 472 aaKnown RBP10.32□□□□□ -0.76
CLK3-205ENST00000561673 MMP13P45452 471 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 RPIAP49247 311 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 DPYSL3Q14195 570 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 ACOX1Q15067 660 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 ELOCQ15369 112 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 SLC18A3Q16572 532 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 SKOR2Q2VWA4 1001 aaPredicted RBP10.32□□□□□ -0.76
CLK3-205ENST00000561673 ANKRD20A8PQ5CZ79 823 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 PERM1Q5SV97 790 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 SPECC1LQ69YQ0 1117 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 PNCKQ6P2M8 343 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 LVRNQ6Q4G3 990 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 CRTC1Q6UUV9 634 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 H2AFVQ71UI9 128 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 PDZD3Q86UT5 571 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 LRRC49Q8IUZ0 686 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 PELI3Q8N2H9 469 aa10.32□□□□□ -0.76
CLK3-205ENST00000561673 CBARPQ8N350 705 aaPredicted RBP10.32□□□□□ -0.76
CLK3-205ENST00000561673 BBS5Q8N3I7 341 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms