RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 NFE4Q86UQ8 179 aa4.48□□□□□ -1.69
VPS13C-208ENST00000559119 SVIPQ8NHG7 77 aa4.48□□□□□ -1.69
VPS13C-208ENST00000559119 ZNF501Q96CX3 271 aaPredicted RBP4.48□□□□□ -1.69
VPS13C-208ENST00000559119 C17orf75Q9HAS0 396 aa4.48□□□□□ -1.69
VPS13C-208ENST00000559119 GREB1LQ9C091 1923 aaPredicted RBP4.48□□□□□ -1.69
VPS13C-208ENST00000559119 HSPB2A8KAH6 182 aa4.47□□□□□ -1.69
VPS13C-208ENST00000559119 IPO5O00410 1097 aaKnown RBP4.47□□□□□ -1.69
VPS13C-208ENST00000559119 ANP32CO43423 234 aa4.47□□□□□ -1.69
VPS13C-208ENST00000559119 CEP104O60308 925 aa4.47□□□□□ -1.69
VPS13C-208ENST00000559119 PTPN2P17706 415 aa4.47□□□□□ -1.69
VPS13C-208ENST00000559119 BLKP51451 505 aa4.47□□□□□ -1.69
VPS13C-208ENST00000559119 HSD17B4P51659 736 aa4.47□□□□□ -1.69
VPS13C-208ENST00000559119 TBX4P57082 545 aa4.47□□□□□ -1.69
VPS13C-208ENST00000559119 YWHAZP63104 245 aaKnown RBP4.47□□□□□ -1.69
VPS13C-208ENST00000559119 HSPB2Q16082 182 aa4.47□□□□□ -1.69
VPS13C-208ENST00000559119 CTXN3Q4LDR2 81 aa4.47□□□□□ -1.69
VPS13C-208ENST00000559119 B3GNT6Q6ZMB0 384 aa4.47□□□□□ -1.69
VPS13C-208ENST00000559119 ODF3L1Q8IXM7 274 aa4.47□□□□□ -1.69
VPS13C-208ENST00000559119 CPXM2Q8N436 756 aa4.47□□□□□ -1.69
VPS13C-208ENST00000559119 THAP4Q8WY91 577 aa4.47□□□□□ -1.69
VPS13C-208ENST00000559119 TWSG1Q9GZX9 223 aa4.47□□□□□ -1.69
VPS13C-208ENST00000559119 C1RLQ9NZP8 487 aa4.47□□□□□ -1.69
VPS13C-208ENST00000559119 GRHPRQ9UBQ7 328 aa4.47□□□□□ -1.69
VPS13C-208ENST00000559119 A3GALT2U3KPV4 340 aa4.47□□□□□ -1.69
VPS13C-208ENST00000559119 IGKV3D-20A0A0C4DH25 116 aa4.46□□□□□ -1.7
VPS13C-208ENST00000559119 C17orf113A0A1B0GUU1 675 aa4.46□□□□□ -1.7
VPS13C-208ENST00000559119 PLIN1O60240 522 aa4.46□□□□□ -1.7
VPS13C-208ENST00000559119 WEE2P0C1S8 567 aa4.46□□□□□ -1.7
VPS13C-208ENST00000559119 TMPOP42166 694 aaKnown RBP4.46□□□□□ -1.7
VPS13C-208ENST00000559119 NR1H2P55055 460 aa4.46□□□□□ -1.7
VPS13C-208ENST00000559119 PITX1P78337 314 aaPredicted RBP4.46□□□□□ -1.7
VPS13C-208ENST00000559119 TMEM30BQ3MIR4 351 aa4.46□□□□□ -1.7
VPS13C-208ENST00000559119 KRTAP5-4Q6L8H1 288 aa4.46□□□□□ -1.7
VPS13C-208ENST00000559119 MOB3CQ70IA8 216 aa4.46□□□□□ -1.7
VPS13C-208ENST00000559119 TMEM57Q8N5G2 664 aa4.46□□□□□ -1.7
VPS13C-208ENST00000559119 TAS1R2Q8TE23 839 aa4.46□□□□□ -1.7
VPS13C-208ENST00000559119 RAB40AQ8WXH6 277 aa4.46□□□□□ -1.7
VPS13C-208ENST00000559119 CNOT9Q92600 299 aaKnown RBP4.46□□□□□ -1.7
VPS13C-208ENST00000559119 CDCA5Q96FF9 252 aa4.46□□□□□ -1.7
VPS13C-208ENST00000559119 MOV10L1Q9BXT6 1211 aaKnown RBP4.46□□□□□ -1.7
VPS13C-208ENST00000559119 SLC32A1Q9H598 525 aa4.46□□□□□ -1.7
VPS13C-208ENST00000559119 KLHL1Q9NR64 748 aa4.46□□□□□ -1.7
VPS13C-208ENST00000559119 SMYD2Q9NRG4 433 aa4.46□□□□□ -1.7
VPS13C-208ENST00000559119 RALYQ9UKM9 306 aaKnown RBP4.46□□□□□ -1.7
VPS13C-208ENST00000559119 NFE2L3Q9Y4A8 694 aa4.46□□□□□ -1.7
VPS13C-208ENST00000559119 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.45□□□□□ -1.7
VPS13C-208ENST00000559119 A0A0U1RQF3 1178 aa4.45□□□□□ -1.7
VPS13C-208ENST00000559119 CBY3A6NI87 242 aa4.45□□□□□ -1.7
VPS13C-208ENST00000559119 AKR1B15C9JRZ8 316 aaPredicted RBP4.45□□□□□ -1.7
VPS13C-208ENST00000559119 SLC2A4P14672 509 aa4.45□□□□□ -1.7
VPS13C-208ENST00000559119 NR0B1P51843 470 aaKnown RBP4.45□□□□□ -1.7
VPS13C-208ENST00000559119 JMJD6Q6NYC1 403 aaPredicted RBP4.45□□□□□ -1.7
VPS13C-208ENST00000559119 C1orf228Q6PIY5 440 aa4.45□□□□□ -1.7
VPS13C-208ENST00000559119 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.45□□□□□ -1.7
VPS13C-208ENST00000559119 DSELQ8IZU8 1212 aa4.45□□□□□ -1.7
VPS13C-208ENST00000559119 CNBD1Q8NA66 436 aa4.45□□□□□ -1.7
VPS13C-208ENST00000559119 SCCPDHQ8NBX0 429 aa4.45□□□□□ -1.7
VPS13C-208ENST00000559119 FAM76AQ8TAV0 307 aa4.45□□□□□ -1.7
VPS13C-208ENST00000559119 MAGEC3Q8TD91 643 aa4.45□□□□□ -1.7
VPS13C-208ENST00000559119 AFG1LQ8WV93 481 aa4.45□□□□□ -1.7
VPS13C-208ENST00000559119 SNAPC3Q92966 411 aa4.45□□□□□ -1.7
VPS13C-208ENST00000559119 KRTAP4-4Q9BYR3 166 aa4.45□□□□□ -1.7
VPS13C-208ENST00000559119 PLEKHA5Q9HAU0 1116 aa4.45□□□□□ -1.7
VPS13C-208ENST00000559119 CNGB3Q9NQW8 809 aa4.45□□□□□ -1.7
VPS13C-208ENST00000559119 MCM9Q9NXL9 1143 aa4.45□□□□□ -1.7
VPS13C-208ENST00000559119 GDAQ9Y2T3 454 aa4.45□□□□□ -1.7
VPS13C-208ENST00000559119 A0A1B0GVY2 172 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 F5H423 210 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-208ENST00000559119 DVL1O14640 695 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 FAM155BO75949 473 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 TK1P04183 234 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 KRT5P13647 590 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 HLA-DOBP13765 273 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 CD53P19397 219 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 ITGAXP20702 1163 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 ADD2P35612 726 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 DVL1P1P54792 670 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-208ENST00000559119 ACTR2P61160 394 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 CTF1Q16619 201 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 KCNT1Q5JUK3 1230 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 ARHGAP11AQ6P4F7 1023 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 KMT5CQ86Y97 462 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 AGBL3Q8NEM8 1001 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 SLC24A4Q8NFF2 622 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 BBS10Q8TAM1 723 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 RND1Q92730 232 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 F2RL3Q96RI0 385 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 PAGR1Q9BTK6 254 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 LMAN2LQ9H0V9 348 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 CSTL1Q9H114 145 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 PCDH9Q9HC56 1237 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 KIF17Q9P2E2 1029 aa4.44□□□□□ -1.7
VPS13C-208ENST00000559119 RRP7AQ9Y3A4 280 aaKnown RBP4.44□□□□□ -1.7
VPS13C-208ENST00000559119 PDS5AQ29RF7 1337 aaKnown RBP4.44□□□□□ -1.7
VPS13C-208ENST00000559119 COL2A1P02458 1487 aaPredicted RBP4.43□□□□□ -1.7
VPS13C-208ENST00000559119 RXRAP19793 462 aa4.43□□□□□ -1.7
VPS13C-208ENST00000559119 ALDH4A1P30038 563 aa4.43□□□□□ -1.7
VPS13C-208ENST00000559119 GNL1P36915 607 aaPredicted RBP4.43□□□□□ -1.7
VPS13C-208ENST00000559119 USP8P40818 1118 aa4.43□□□□□ -1.7
VPS13C-208ENST00000559119 HTR3AP46098 478 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms