RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 LACC1Q8IV20 430 aa10.95□□□□□ -0.66
USP3-206ENST00000558157 SFRP1Q8N474 314 aa10.95□□□□□ -0.66
USP3-206ENST00000558157 LEMD2Q8NC56 503 aa10.95□□□□□ -0.66
USP3-206ENST00000558157 RASSF5Q8WWW0 418 aa10.95□□□□□ -0.66
USP3-206ENST00000558157 LPGAT1Q92604 370 aa10.95□□□□□ -0.66
USP3-206ENST00000558157 ZUFSPQ96AP4 578 aa10.95□□□□□ -0.66
USP3-206ENST00000558157 TMA16Q96EY4 203 aaKnown RBP10.95□□□□□ -0.66
USP3-206ENST00000558157 TRIM15Q9C019 465 aa10.95□□□□□ -0.66
USP3-206ENST00000558157 MTMR12Q9C0I1 747 aa10.95□□□□□ -0.66
USP3-206ENST00000558157 CCM2LQ9NUG4 571 aaPredicted RBP10.95□□□□□ -0.66
USP3-206ENST00000558157 DNMT3BQ9UBC3 853 aaKnown RBP10.95□□□□□ -0.66
USP3-206ENST00000558157 PRELID1Q9Y255 219 aa10.95□□□□□ -0.66
USP3-206ENST00000558157 ISPDA4D126 451 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 LACTBL1A8MY62 500 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 STX16-NPEPL1H3BU86 382 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 H7C0C1 242 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 ACOX3O15254 700 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 SCO2O43819 266 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 ENDOD1O94919 500 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 IL18RAPO95256 599 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 RASAL1O95294 804 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 KRT6AP02538 564 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 KRT6BP04259 564 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 ENO2P09104 434 aaPredicted RBP10.94□□□□□ -0.66
USP3-206ENST00000558157 MLNP12872 115 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 IL1R2P27930 398 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 SERPINB1P30740 379 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 ATP5OP48047 213 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 PRKAA1Q13131 559 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 SURF1Q15526 300 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 AASDHQ4L235 1098 aaPredicted RBP10.94□□□□□ -0.66
USP3-206ENST00000558157 UBXN11Q5T124 520 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 TMTC4Q5T4D3 741 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 BROXQ5VW32 411 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 BTBD8Q5XKL5 378 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 GTF2IRD2BQ6EKJ0 949 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 HACD2Q6Y1H2 254 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 KIAA0408Q6ZU52 694 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 USP43Q70EL4 1123 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 GTF2IRD2Q86UP8 949 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 CBR4Q8N4T8 237 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 PIK3C3Q8NEB9 887 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 OR2T34Q8NGX1 318 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 OR2T3Q8NH03 318 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 RDH11Q8TC12 318 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 BTN2A3PQ96KV6 586 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 NAT9Q9BTE0 207 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 NXF3Q9H4D5 531 aaKnown RBP10.94□□□□□ -0.66
USP3-206ENST00000558157 FBXO8Q9NRD0 319 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 SNTG2Q9NY99 539 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 CD300AQ9UGN4 299 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 AQP12BA6NM10 295 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 NFICP08651 508 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 FCGR1AP12314 374 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 TCN1P20061 433 aaPredicted RBP10.94□□□□□ -0.66
USP3-206ENST00000558157 TYK2P29597 1187 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 RFC1P35251 1148 aaPredicted RBP10.94□□□□□ -0.66
USP3-206ENST00000558157 ATXN3P54252 364 aaPredicted RBP10.94□□□□□ -0.66
USP3-206ENST00000558157 TFAMQ00059 246 aaKnown RBP10.94□□□□□ -0.66
USP3-206ENST00000558157 CBX2Q14781 532 aaPredicted RBP10.94□□□□□ -0.66
USP3-206ENST00000558157 NEDD8Q15843 81 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 ATP6AP1Q15904 470 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 KYAT1Q16773 422 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 SMTNL2Q2TAL5 461 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 SLC10A6Q3KNW5 377 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 FBXO47Q5MNV8 452 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 C6orf10Q5SRN2 563 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 ATAD3BQ5T9A4 648 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 SIGIRRQ6IA17 410 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 USP51Q70EK9 711 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 SPRED1Q7Z699 444 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 DHFR2Q86XF0 187 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 GALNT13Q8IUC8 556 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 AQP12AQ8IXF9 295 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 TMEM130Q8N3G9 435 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 DHRSXQ8N5I4 330 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 SLC4A11Q8NBS3 891 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 OR2B2Q9GZK3 357 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 AGO3Q9H9G7 860 aaKnown RBP10.94□□□□□ -0.66
USP3-206ENST00000558157 SCUBE2Q9NQ36 999 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 ST3GAL5Q9UNP4 418 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 HES2Q9Y543 173 aa10.94□□□□□ -0.66
USP3-206ENST00000558157 SAC3D1A6NKF1 404 aa10.93□□□□□ -0.66
USP3-206ENST00000558157 H0YAE9 185 aa10.93□□□□□ -0.66
USP3-206ENST00000558157 KCNN4O15554 427 aa10.93□□□□□ -0.66
USP3-206ENST00000558157 PHGDHO43175 533 aaKnown RBP10.93□□□□□ -0.66
USP3-206ENST00000558157 ASNA1O43681 348 aa10.93□□□□□ -0.66
USP3-206ENST00000558157 CKBP12277 381 aa10.93□□□□□ -0.66
USP3-206ENST00000558157 TGM2P21980 687 aa10.93□□□□□ -0.66
USP3-206ENST00000558157 RPL10P27635 214 aaKnown RBP10.93□□□□□ -0.66
USP3-206ENST00000558157 GRIA3P42263 894 aa10.93□□□□□ -0.66
USP3-206ENST00000558157 PPP6R3Q5H9R7 873 aaPredicted RBP10.93□□□□□ -0.66
USP3-206ENST00000558157 FAM26DQ5JW98 314 aa10.93□□□□□ -0.66
USP3-206ENST00000558157 PERM1Q5SV97 790 aa10.93□□□□□ -0.66
USP3-206ENST00000558157 JADE1Q6IE81 842 aa10.93□□□□□ -0.66
USP3-206ENST00000558157 UGT3A1Q6NUS8 523 aa10.93□□□□□ -0.66
USP3-206ENST00000558157 BPHLQ86WA6 291 aaPredicted RBP10.93□□□□□ -0.66
USP3-206ENST00000558157 ARMC8Q8IUR7 673 aa10.93□□□□□ -0.66
USP3-206ENST00000558157 ANGPTL6Q8NI99 470 aa10.93□□□□□ -0.66
USP3-206ENST00000558157 CAPSLQ8WWF8 208 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms