RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 HOXC13P31276 330 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 SERPINH1P50454 418 aaKnown RBP12.94□□□□□ -0.34
LDLR-207ENST00000558013 MGAT5BQ3V5L5 792 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 ISCA2Q86U28 154 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 KLHDC9Q8NEP7 349 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 IGSF8Q969P0 613 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 EME1Q96AY2 570 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 UBXN10Q96LJ8 280 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 ZNF512Q96ME7 567 aaPredicted RBP12.94□□□□□ -0.34
LDLR-207ENST00000558013 UXTQ9UBK9 157 aaPredicted RBP12.94□□□□□ -0.34
LDLR-207ENST00000558013 VPS28Q9UK41 221 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 GIT1Q9Y2X7 761 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 TRAF6Q9Y4K3 522 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 SNX13Q9Y5W8 968 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 ZNF236Q9UL36 1845 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 CCDC160A6NGH7 325 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 GPC4O75487 556 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 ZNF26P17031 533 aaPredicted RBP12.94□□□□□ -0.34
LDLR-207ENST00000558013 CKMT2P17540 419 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 PAMP19021 973 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 CTGFP29279 349 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 RPL9P32969 192 aaKnown RBP12.94□□□□□ -0.34
LDLR-207ENST00000558013 SH3BP2P78314 561 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 TRIM25Q14258 630 aaKnown RBP12.94□□□□□ -0.34
LDLR-207ENST00000558013 CYTH1Q15438 398 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 CHSY3Q70JA7 882 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 RETREG3Q86VR2 466 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 FUNDC1Q8IVP5 155 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 PRICKLE1Q96MT3 831 aaPredicted RBP12.94□□□□□ -0.34
LDLR-207ENST00000558013 CIB1Q99828 191 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 KATNAL1Q9BW62 490 aa12.94□□□□□ -0.34
LDLR-207ENST00000558013 A0A087X1B8 175 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 AP3B1O00203 1094 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 TRIM38O00635 465 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 MUSKO15146 869 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 S1PR4O95977 384 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 UGT1A6P19224 532 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 LEPRP48357 1165 aaKnown RBP12.93□□□□□ -0.34
LDLR-207ENST00000558013 ECT2LQ008S8 904 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 EFEMP1Q12805 493 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 SEMA3AQ14563 771 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 MTX3Q5HYI7 312 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 SIRPB2Q5JXA9 342 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 AGAP9Q5VTM2 703 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 AFMIDQ63HM1 303 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 AP1ARQ63HQ0 302 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 ZNF549Q6P9A3 640 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 MYO1HQ8N1T3 1032 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 IMP4Q96G21 291 aaKnown RBP12.93□□□□□ -0.34
LDLR-207ENST00000558013 NOL11Q9H8H0 719 aaKnown RBP12.93□□□□□ -0.34
LDLR-207ENST00000558013 MEAF6Q9HAF1 191 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 PLOD2O00469 737 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 FGF10O15520 208 aaPredicted RBP12.93□□□□□ -0.34
LDLR-207ENST00000558013 HSPA1AP0DMV8 641 aaKnown RBP12.93□□□□□ -0.34
LDLR-207ENST00000558013 HSPA1BP0DMV9 641 aaKnown RBP12.93□□□□□ -0.34
LDLR-207ENST00000558013 DNAJB13P59910 316 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 TIAL1Q01085 375 aaKnown RBP eCLIP12.93□□□□□ -0.34
LDLR-207ENST00000558013 ZNF33AQ06730 810 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 TRIM32Q13049 653 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 HERC3Q15034 1050 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 MYLK3Q32MK0 819 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.93□□□□□ -0.34
LDLR-207ENST00000558013 BRMS1LQ5PSV4 323 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 SETD3Q86TU7 594 aaPredicted RBP12.93□□□□□ -0.34
LDLR-207ENST00000558013 OR13C4Q8NGS5 318 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 NCSTNQ92542 709 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 SLC25A51Q9H1U9 297 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 AP4S1Q9Y587 144 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 ANKRD12Q6UB98 2062 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 A0A0U1RQS6 177 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 HEATR9A2RTY3 570 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 DNAJB2P25686 324 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 ACVRL1P37023 503 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 SLC7A2P52569 658 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 ZNF135P52742 658 aaPredicted RBP12.93□□□□□ -0.34
LDLR-207ENST00000558013 GALNT3Q14435 633 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 RBBP5Q15291 538 aaKnown RBP12.93□□□□□ -0.34
LDLR-207ENST00000558013 MARC1Q5VT66 337 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 ARMC3Q5W041 872 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 ATAD1Q8NBU5 361 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 ZFP28Q8NHY6 868 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 BLOC1S5Q8TDH9 187 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 ASB9Q96DX5 294 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 DDX18Q9NVP1 670 aaKnown RBP12.93□□□□□ -0.34
LDLR-207ENST00000558013 POLR3BQ9NW08 1133 aaPredicted RBP12.93□□□□□ -0.34
LDLR-207ENST00000558013 RNF11Q9Y3C5 154 aa12.93□□□□□ -0.34
LDLR-207ENST00000558013 ZNF839A8K0R7 811 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 H3BMM5 538 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 MRASO14807 208 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 TIPRLO75663 272 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 PRAMEP78395 509 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 TSPY1Q01534 308 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 GRB7Q14451 532 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 TAF1CQ15572 869 aaPredicted RBP12.92□□□□□ -0.34
LDLR-207ENST00000558013 UNC50Q53HI1 259 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 MS4A13Q5J8X5 152 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 C6orf10Q5SRN2 563 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 RAP1GAP2Q684P5 730 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 ZFP1Q6P2D0 407 aa12.92□□□□□ -0.34
LDLR-207ENST00000558013 LZTR1Q8N653 840 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms