RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 PCNAP12004 261 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 FDPSP14324 419 aaKnown RBP3.23□□□□□ -1.89
TRAV28-201ENST00000557548 ATP6V1B1P15313 513 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 CTPS1P17812 591 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 PTAFRP25105 342 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 EPHB2P29323 1055 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 HOXA7P31268 230 aaPredicted RBP3.23□□□□□ -1.89
TRAV28-201ENST00000557548 HOXC13P31276 330 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 MC5RP33032 325 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 SHMT1P34896 483 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 MPLP40238 635 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 SUOXP51687 545 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 CLCNKBP51801 687 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 DGCR2P98153 550 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 HOXA4Q00056 320 aaPredicted RBP3.23□□□□□ -1.89
TRAV28-201ENST00000557548 PGM5Q15124 567 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 TCTN1Q2MV58 587 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 FAM153CQ494X1 144 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 CRY2Q49AN0 593 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 CDONQ4KMG0 1287 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 LRIF1Q5T3J3 769 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 TSTD2Q5T7W7 516 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 KRT79Q5XKE5 535 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 TMEM198Q66K66 360 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 CAVIN1Q6NZI2 390 aaKnown RBP3.23□□□□□ -1.89
TRAV28-201ENST00000557548 CEP85Q6P2H3 762 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 FBXO46Q6PJ61 603 aaPredicted RBP3.23□□□□□ -1.89
TRAV28-201ENST00000557548 SUSD1Q6UWL2 747 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 PET117Q6UWS5 81 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 LRIG3Q6UXM1 1119 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 RNF207Q6ZRF8 634 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 CYB5R4Q7L1T6 521 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 HAPLN4Q86UW8 402 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 METTL23Q86XA0 190 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 CEP57L1Q8IYX8 460 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 NUP93Q8N1F7 819 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 CARNMT1Q8N4J0 409 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 ARL10Q8N8L6 244 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 ARL14EPQ8N8R7 260 aaPredicted RBP3.23□□□□□ -1.89
TRAV28-201ENST00000557548 MCUQ8NE86 351 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 GJC3Q8NFK1 279 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 OR14L1PQ8NHC6 308 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 GDAP1Q8TB36 358 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 MGARPQ8TDB4 240 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 PIGOQ8TEQ8 1089 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 DEPDC1BQ8WUY9 529 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 CAVIN3Q969G5 261 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 PTERQ96BW5 349 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 ZNF419Q96HQ0 510 aaPredicted RBP3.23□□□□□ -1.89
TRAV28-201ENST00000557548 TMEM68Q96MH6 324 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 C8orf49Q96NF6 230 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 BBC3Q96PG8 261 aaPredicted RBP3.23□□□□□ -1.89
TRAV28-201ENST00000557548 RAB3IPQ96QF0 476 aaPredicted RBP3.23□□□□□ -1.89
TRAV28-201ENST00000557548 CITED2Q99967 270 aaPredicted RBP3.23□□□□□ -1.89
TRAV28-201ENST00000557548 THUMPD3Q9BV44 507 aaKnown RBP3.23□□□□□ -1.89
TRAV28-201ENST00000557548 MRIQ9BWK5 157 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 DBNDD1Q9H9R9 158 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 MAGEE1Q9HCI5 957 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 PAG1Q9NWQ8 432 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 PLEKHB1Q9UF11 243 aaPredicted RBP3.23□□□□□ -1.89
TRAV28-201ENST00000557548 PLAGL1Q9UM63 463 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 POMT1Q9Y6A1 747 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 MAU2Q9Y6X3 613 aa3.23□□□□□ -1.89
TRAV28-201ENST00000557548 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.22□□□□□ -1.89
TRAV28-201ENST00000557548 TCRBV21S2A2A0A5A6 115 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 C1orf226A1L170 272 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 INPPL1O15357 1258 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 PLRG1O43660 514 aaKnown RBP3.22□□□□□ -1.89
TRAV28-201ENST00000557548 NEURL1O76050 574 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 SLCO2B1O94956 709 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 ZNF202O95125 648 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 ESRRBO95718 433 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 FTCDO95954 541 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 PEX11BO96011 259 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 PLAUP00749 431 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 TPOP07202 933 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 ETFAP13804 333 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 SRD5A1P18405 259 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 ANXA7P20073 488 aaKnown RBP3.22□□□□□ -1.89
TRAV28-201ENST00000557548 TACR2P21452 398 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 TACR3P29371 465 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 MCM7P33993 719 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 ADRA1BP35368 520 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 CCR10P46092 362 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 CENPAP49450 140 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 NPY4RP50391 375 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 CCR3P51677 355 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 CSE1LP55060 971 aaKnown RBP3.22□□□□□ -1.89
TRAV28-201ENST00000557548 KRTAP10-9P60411 292 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 YPEL5P62699 121 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 TMF1P82094 1093 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 SORDQ00796 357 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 ECT2LQ008S8 904 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 TFAP4Q01664 338 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 FOXI1Q12951 378 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 KCNC3Q14003 757 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 PTPAQ15257 358 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 E2F5Q15329 346 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 DLG2Q15700 870 aa3.22□□□□□ -1.89
TRAV28-201ENST00000557548 MMEL1Q495T6 779 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms